PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_091830_ffrk.t1
Common NameSOVF_091830
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family GeBP
Protein Properties Length: 405aa    MW: 44190.5 Da    PI: 5.5009
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_091830_ffrk.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573100.31.8e-31161250197
             DUF573   1 klfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 
                        klfqr++se Dei +L+G+i+++ak+g++p+ +id+fy fvkks++++v+k q+v+K+rrLKkKf + +kk       +++++h+ ++fels
  Sp_091830_ffrk.t1 161 KLFQRVFSEGDEIEILKGMIEYRAKRGADPMVEIDDFYGFVKKSVHVDVNKGQIVDKVRRLKKKFFNAKKK-------KLNNPHEIHAFELS 245
                        579*****************************************************************999.......99************ PP

             DUF573  93 kkiWg 97 
                        kkiW+
  Sp_091830_ffrk.t1 246 KKIWD 250
                        ****7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.5E-26163250IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MARSKTQKPL TEDPPEADSS EEVTGSSSSG EEGEEPEEEV SNTGSSSGEE EEEETPSTPV  60
PPPSFKKIPL SAAATKRPLS EDDFDDDTSD DSPLHTLKSA SKPAIETPSK PRSKSTVAAE  120
KRPSETELKT SSKKPRKEKL VSGAAPAAAA SPVVHEEASK KLFQRVFSEG DEIEILKGMI  180
EYRAKRGADP MVEIDDFYGF VKKSVHVDVN KGQIVDKVRR LKKKFFNAKK KKLNNPHEIH  240
AFELSKKIWD INGGDDVMED DKINNVTIAE YNNNHNNNVG SKPNSKPRVL KLKTKVGVGV  300
GGGGGGGGIS SGNGVVVMED NEGEKGGGKV SDIVEKDVEF EVGEAVAWEK LRKRGLTMMG  360
AKARAEIDEM WEKVAMKQAE AKIMRSEVER EETRRIMEAL RSGKN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1218231RRLKKKFFNAKKKK
2218232RRLKKKFFNAKKKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021854564.10.0probable transcription factor At1g61730
TrEMBLA0A0K9RBK20.0A0A0K9RBK2_SPIOL; Uncharacterized protein
STRINGXP_010686932.14e-93(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.11e-16DNA-binding storekeeper protein-related transcriptional regulator