PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_090720_poet.t1
Common NameSOVF_090720
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family WRKY
Protein Properties Length: 364aa    MW: 40914.8 Da    PI: 10.0795
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_090720_poet.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.59e-31297354359
                        -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        D ++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ e+p+++++tYegeHnh 
  Sp_090720_poet.t1 297 DDFSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCLEEPSMLIVTYEGEHNHA 354
                        99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105333.1E-17248293IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.9E-33283354IPR003657WRKY domain
PROSITE profilePS5081129.413290353IPR003657WRKY domain
SuperFamilySSF1182901.16E-26291354IPR003657WRKY domain
SMARTSM007741.1E-37295355IPR003657WRKY domain
PfamPF031061.9E-26297353IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MEIELANKVA VESGHRVLSL LCEKQDSHKL NLMAETGDAV CKFNRVISLV GKKGFGHARM  60
RRLKNLPSSL PENMLLETPH LRPESAGKPI ELLPSSENFK NSVSEIDQKV VNLPQIGQKV  120
FAEKGSIDFT LSVKLPVQNC THQNLPQNLE FLQQQQRQQF QQQMLQRVQL EQHMKYQAEM  180
MNNSSRSGGN GINLKFDGSS ICTQTMSSNR SFVSSLSMDG SVTNLSQNSF QLFGLPQSSD  240
PNSQHLIRKR CLVKDEGGSL KCGSGSKCHC SKRRKLRVKR SIKVPAISNK NADIPPDDFS  300
WRKYGQKPIK GSPHPRGYYK CSSVRGCPAR KHVERCLEEP SMLIVTYEGE HNHAKFIASH  360
SWQT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-202933531271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021835464.10.0probable WRKY transcription factor 74
SwissprotQ93WU61e-100WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBLA0A0K9R9P00.0A0A0K9R9P0_SPIOL; Uncharacterized protein
STRINGXP_010675100.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.15e-72WRKY DNA-binding protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]