PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_090510_fysy.t2
Common NameSOVF_090510
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family G2-like
Protein Properties Length: 253aa    MW: 28053.4 Da    PI: 5.4042
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_090510_fysy.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like108.53.5e-341872155
            G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                       k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  Sp_090510_fysy.t2 18 KQRLRWTNELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 72
                       79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.4421575IPR017930Myb domain
SuperFamilySSF466892.15E-181672IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.7E-331673IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-261873IPR006447Myb domain, plants
PfamPF002499.3E-102071IPR001005SANT/Myb domain
PfamPF143791.2E-23100146IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MDPVNGNNLS NNHSMSSKQR LRWTNELHER FVDAVAQLGG PDRATPKGVL RVMGVQGLTI  60
YHVKSHLQKY RLAKYLPDSL SEDKKESADL LYGLESSSGM QITEALKLQM EVQKRLHEQL  120
EVQRQLQLRI EAQGKYLKKI IEEQQRLSGT LAKMPGSGDS GSGSLMCPEP TKSDPATPAP  180
TSESPLGKNS RECAVSKNPS LDDESFSSQH EPLTPDSICL DATTCENLIE ETVRNPCLTN  240
DEAFSNQYSS SEY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A8e-251875259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B8e-251875259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A8e-251875259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C8e-251875259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D8e-251875259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F8e-251875259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H8e-251875259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J8e-251875259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00252DAPTransfer from AT2G01060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021861324.10.0myb family transcription factor PHL7-like isoform X2
SwissprotQ9SJW01e-103PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A0K9RB720.0A0A0K9RB72_SPIOL; Uncharacterized protein
STRINGXP_010686602.11e-143(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.13e-89G2-like family protein