PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_090510_fysy.t1 | ||||||||
Common Name | SOVF_090510 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | G2-like | ||||||||
Protein Properties | Length: 257aa MW: 28468.8 Da PI: 5.4154 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 108.5 | 3.6e-34 | 18 | 72 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Sp_090510_fysy.t1 18 KQRLRWTNELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 72 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.442 | 15 | 75 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.15E-18 | 16 | 72 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.9E-33 | 16 | 73 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.2E-26 | 18 | 73 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.5E-10 | 20 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.2E-23 | 104 | 150 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MDPVNGNNLS NNHSMSSKQR LRWTNELHER FVDAVAQLGG PDRATPKGVL RVMGVQGLTI 60 YHVKSHLQKY RLAKYLPDSL SEGEKTDKKE SADLLYGLES SSGMQITEAL KLQMEVQKRL 120 HEQLEVQRQL QLRIEAQGKY LKKIIEEQQR LSGTLAKMPG SGDSGSGSLM CPEPTKSDPA 180 TPAPTSESPL GKNSRECAVS KNPSLDDESF SSQHEPLTPD SICLDATTCE NLIEETVRNP 240 CLTNDEAFSN QYSSSEY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-24 | 18 | 75 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-24 | 18 | 75 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 1e-24 | 18 | 75 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-24 | 18 | 75 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-24 | 18 | 75 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-24 | 18 | 75 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-24 | 18 | 75 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-24 | 18 | 75 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-24 | 18 | 75 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-24 | 18 | 75 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-24 | 18 | 75 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-24 | 18 | 75 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00252 | DAP | Transfer from AT2G01060 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021861323.1 | 0.0 | myb family transcription factor PHL7-like isoform X1 | ||||
Swissprot | Q9SJW0 | 1e-107 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A0A0K9R9S3 | 0.0 | A0A0K9R9S3_SPIOL; Uncharacterized protein | ||||
STRING | XP_010686602.1 | 1e-146 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 5e-94 | G2-like family protein |