PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_089860_ynay.t1 | ||||||||
Common Name | SOVF_089860 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | C2H2 | ||||||||
Protein Properties | Length: 231aa MW: 26450.5 Da PI: 7.7943 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.5 | 0.0001 | 46 | 68 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H Sp_089860_ynay.t1 46 YSCNFCRREFRSAQALGGHMNVH 68 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.12E-6 | 43 | 73 | No hit | No description |
PROSITE profile | PS50157 | 11.198 | 46 | 73 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 48 | 68 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MEEGRCWMVT KNRASSKCGE ETWEEKAFAE DAAGMLGGCV WPPRSYSCNF CRREFRSAQA 60 LGGHMNVHRR DRARLKQFSS SQHPDPHPRH RIPSYKSSLS LSSHKEEDDA IIDTNPNTFC 120 SLHPESELVS SFWTNRDKNV SLFCLHSDEL TKDLPLKISK NHERPRSVIS LSNDSATYED 180 NKDVDHRKRR KLDKSSASVI YKSDKDDADV DPPKFDCLDL ELRLGGRPKV Q |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 1e-12 | 41 | 68 | 2 | 29 | superman protein |
2l1o_A | 1e-12 | 41 | 68 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may regulate cell division and growth. {ECO:0000269|PubMed:12154136}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021839359.1 | 1e-170 | zinc finger protein 10-like | ||||
Swissprot | O80942 | 1e-26 | ZFP10_ARATH; Zinc finger protein 10 | ||||
TrEMBL | A0A0K9RC36 | 1e-170 | A0A0K9RC36_SPIOL; Uncharacterized protein | ||||
STRING | XP_010678076.1 | 8e-61 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37740.1 | 2e-27 | zinc-finger protein 10 |