 |
Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Sp_089690_nwmr.t1 |
| Common Name | SOVF_089690 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
|
| Family |
LBD |
| Protein Properties |
Length: 196aa MW: 21615.4 Da PI: 7.4194 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sp_089690_nwmr.t1 | genome | TBVR | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 143.6 | 5.9e-45 | 14 | 112 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92
+CaaCk+lrrkC ++C++apyfp e+p+kfanvhk+FGasnv+kll++l +++reda++sl+yeAear+rdPvyG+vg i+ lq+q+++l++
Sp_089690_nwmr.t1 14 PCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVQKLQK 105
7******************************************************************************************* PP
DUF260 93 elallke 99
el+++++
Sp_089690_nwmr.t1 106 ELDAANA 112
**99876 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem |
| Sequence ? help Back to Top |
| Protein Sequence Length: 196 aa
Download sequence Send
to blast |
MASSSSSSSS YNSPCAACKF LRRKCMPGCI FAPYFPPEEP QKFANVHKIF GASNVTKLLN 60
ELLPHQREDA VNSLAYEAEA RVRDPVYGCV GAISYLQRQV QKLQKELDAA NADLLRYACH 120
EINSTTVAMQ GIGVVPPPPP PPPPRPPHEQ FGNYYHQPSS SDIMLQPSYP IIPWNVDMNV 180
VNQRGGGDNN NNQGNM
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| Functional Description ? help
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| Source |
Description |
| UniProt | Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269|PubMed:11934861}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC140849 | 1e-53 | AC140849.8 Medicago truncatula clone mth2-17f20, complete sequence. |
| GenBank | AC147877 | 1e-53 | AC147877.10 Medicago truncatula clone mth2-9b13, complete sequence. |
| GenBank | CU234113 | 1e-53 | CU234113.3 M.truncatula DNA sequence from clone MTH2-16M17 on chromosome 3, complete sequence. |
| GenBank | JN412594 | 1e-53 | JN412594.2 Medicago truncatula LOB domain protein mRNA, complete cds. |
| GenBank | JQ653161 | 1e-53 | JQ653161.1 Medicago truncatula elongated petiolule 1 (ELP1) gene, complete cds. |
