PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_089450_rdgt.t1 | ||||||||
Common Name | SOVF_089450 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | WRKY | ||||||||
Protein Properties | Length: 463aa MW: 51291.7 Da PI: 9.2606 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.3 | 2.9e-32 | 186 | 242 | 3 | 60 |
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 DgynWrKYGqK+vkgse+prsYY+Ct+++C vkkkvers d++++ei+Y+geH+h+k Sp_089450_rdgt.t1 186 DGYNWRKYGQKQVKGSEYPRSYYKCTHPKCLVKKKVERSL-DGQITEIVYKGEHDHPK 242 9***************************************.***************85 PP | |||||||
2 | WRKY | 101.4 | 5.3e-32 | 379 | 435 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+vkg++fprsYYrCts +C+v+k ver+ ++p+++++tYeg+Hnhe Sp_089450_rdgt.t1 379 DGFRWRKYGQKVVKGNPFPRSYYRCTSVKCNVRKYVERALDEPSAFITTYEGRHNHE 435 9*******************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.2E-28 | 176 | 243 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.84E-25 | 183 | 243 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.8E-35 | 184 | 242 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.4E-24 | 186 | 241 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.342 | 186 | 243 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.7E-31 | 364 | 437 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.214 | 372 | 437 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.15E-27 | 372 | 437 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.0E-37 | 377 | 436 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.2E-25 | 379 | 435 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009957 | Biological Process | epidermal cell fate specification | ||||
GO:0010214 | Biological Process | seed coat development | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 463 aa Download sequence Send to blast |
MEVKGIDRVV IAKPVASRPS STGSLLSGNI NSSPPPGKAC SEMAVAAIRP KTVRVKPTIY 60 HSPQAENIQV GTLFGAAPYF SSDDMSGVQN QSTIFKPLAK VVSKETVSFL LSMGNSSVTH 120 QQALFQVDVS AQQEKHLLSS NQHSSNLSQV EICQLVENPT MEQQMLDGEP RMMPSSTAGA 180 DRPSCDGYNW RKYGQKQVKG SEYPRSYYKC THPKCLVKKK VERSLDGQIT EIVYKGEHDH 240 PKPDHAKGLF SGTNKDHNNG DPKLHDNICE RNGGLERLTE SENAVRLSTQ STFSGTCAPF 300 CYPVDAEKHC ASDRTAVNSA ALDRNCEEVV KGLKADGDRI KNKRRKQDNQ NNEAGKLGQG 360 VQGPRILLQN NTEPEITGDG FRWRKYGQKV VKGNPFPRSY YRCTSVKCNV RKYVERALDE 420 PSAFITTYEG RHNHEMPIKI MNYSAVAEPN TQARTSKDKS HKS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-28 | 186 | 437 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 3e-28 | 186 | 437 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021851645.1 | 0.0 | WRKY transcription factor 44-like isoform X1 | ||||
TrEMBL | A0A0K9RBL0 | 0.0 | A0A0K9RBL0_SPIOL; Uncharacterized protein | ||||
STRING | XP_010682970.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03340.1 | 4e-67 | WRKY DNA-binding protein 3 |