PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_089450_rdgt.t1
Common NameSOVF_089450
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family WRKY
Protein Properties Length: 463aa    MW: 51291.7 Da    PI: 9.2606
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_089450_rdgt.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.32.9e-32186242360
                        -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
               WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                        DgynWrKYGqK+vkgse+prsYY+Ct+++C vkkkvers  d++++ei+Y+geH+h+k
  Sp_089450_rdgt.t1 186 DGYNWRKYGQKQVKGSEYPRSYYKCTHPKCLVKKKVERSL-DGQITEIVYKGEHDHPK 242
                        9***************************************.***************85 PP
2WRKY101.45.3e-32379435359
                        -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        Dg++WrKYGqK+vkg++fprsYYrCts +C+v+k ver+ ++p+++++tYeg+Hnhe
  Sp_089450_rdgt.t1 379 DGFRWRKYGQKVVKGNPFPRSYYRCTSVKCNVRKYVERALDEPSAFITTYEGRHNHE 435
                        9*******************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-28176243IPR003657WRKY domain
SuperFamilySSF1182904.84E-25183243IPR003657WRKY domain
SMARTSM007742.8E-35184242IPR003657WRKY domain
PfamPF031062.4E-24186241IPR003657WRKY domain
PROSITE profilePS5081123.342186243IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.7E-31364437IPR003657WRKY domain
PROSITE profilePS5081132.214372437IPR003657WRKY domain
SuperFamilySSF1182901.15E-27372437IPR003657WRKY domain
SMARTSM007746.0E-37377436IPR003657WRKY domain
PfamPF031063.2E-25379435IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010214Biological Processseed coat development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MEVKGIDRVV IAKPVASRPS STGSLLSGNI NSSPPPGKAC SEMAVAAIRP KTVRVKPTIY  60
HSPQAENIQV GTLFGAAPYF SSDDMSGVQN QSTIFKPLAK VVSKETVSFL LSMGNSSVTH  120
QQALFQVDVS AQQEKHLLSS NQHSSNLSQV EICQLVENPT MEQQMLDGEP RMMPSSTAGA  180
DRPSCDGYNW RKYGQKQVKG SEYPRSYYKC THPKCLVKKK VERSLDGQIT EIVYKGEHDH  240
PKPDHAKGLF SGTNKDHNNG DPKLHDNICE RNGGLERLTE SENAVRLSTQ STFSGTCAPF  300
CYPVDAEKHC ASDRTAVNSA ALDRNCEEVV KGLKADGDRI KNKRRKQDNQ NNEAGKLGQG  360
VQGPRILLQN NTEPEITGDG FRWRKYGQKV VKGNPFPRSY YRCTSVKCNV RKYVERALDE  420
PSAFITTYEG RHNHEMPIKI MNYSAVAEPN TQARTSKDKS HKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-28186437877Probable WRKY transcription factor 4
2lex_A3e-28186437877Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021851645.10.0WRKY transcription factor 44-like isoform X1
TrEMBLA0A0K9RBL00.0A0A0K9RBL0_SPIOL; Uncharacterized protein
STRINGXP_010682970.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.14e-67WRKY DNA-binding protein 3