PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_087190_xtrp.t1
Common NameSOVF_087190
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C2H2
Protein Properties Length: 532aa    MW: 59759.9 Da    PI: 7.1452
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_087190_xtrp.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.00036229251123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C+ Cgk+F+++  L  H  +H
  Sp_087190_xtrp.t1 229 FECKACGKTFTSHQALGGHRASH 251
                        89**************9999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.34E-51236No hitNo description
PROSITE profilePS501579.1621335IPR007087Zinc finger, C2H2
SMARTSM003552.11335IPR015880Zinc finger, C2H2-like
PfamPF139120.00141535IPR007087Zinc finger, C2H2
PROSITE patternPS0002801535IPR007087Zinc finger, C2H2
PfamPF139125.4E-9229253IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.427229256IPR007087Zinc finger, C2H2
SuperFamilySSF576671.75E-8229251No hitNo description
SMARTSM003550.032229251IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280231251IPR007087Zinc finger, C2H2
SuperFamilySSF576671.75E-8317344No hitNo description
PfamPF139122.9E-13321345IPR007087Zinc finger, C2H2
SMARTSM003550.44322344IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.369322344IPR007087Zinc finger, C2H2
PROSITE patternPS000280324344IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MALVVDEQST LKYFCRICKK GFMCGRALGG HMRAHGIGDE SGGFDDDDRA SDWEDKGSPT  60
NKRMYKLRTN PNRVRSYRVC KNCGREFMSF KSFLEPCKCS SDDVDVESPL SSPESDEDDG  120
QGGMTRASGW SKRKRSFRTK VDSFTPNHCP SSEEEDLANC LMMLSNATVE HRHPLIMVDE  180
SSKEDERRHS MSFIMTREQP YSSDHLMKAK GTNNNNNNNN NNNNAKGSFE CKACGKTFTS  240
HQALGGHRAS HKKVKGCFAA RLDHQVEQDH SYNGEEDNFV SSSDQEFMRP DKSCTTYQFE  300
YGAGSSSPLP NLSSKRPKSK VHECSICHRV FSSGQALGGH KRCHWITSNA PPDNSTLARF  360
QELHDQIEQV HQRAAAPVFG TQLSISEQQK ALDLNIPASA LASNHHHHHH HHQQHQDMLR  420
LQRDPRNPLS FQVPTDILLQ SWGNTVNVEI KQENHQHLQH QQGNNYEIIN QGENDKKINN  480
NNISVNDSHT PTNADDEADS KLKLAKLCDN MTTNGSSSPW LQVGIAPTNA QS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021849312.10.0zinc finger protein ZAT4-like
TrEMBLA0A0K9RCE30.0A0A0K9RCE3_SPIOL; Uncharacterized protein
STRINGXP_010692450.11e-177(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.12e-22C2H2-like zinc finger protein