PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_087120_apwf.t1
Common NameSOVF_087120
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family WRKY
Protein Properties Length: 282aa    MW: 31548.1 Da    PI: 8.8918
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_087120_apwf.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.92.7e-30214271359
                        -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        D+y+WrKYGqK++kgs++prsYY+C++  gCp++k+ver+ +d +++++tYegeH h+
  Sp_087120_apwf.t1 214 DEYCWRKYGQKPIKGSPHPRSYYKCSTCkGCPARKQVERCLQDSSMLIVTYEGEHVHS 271
                        9************************9877****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105335.3E-13173210IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.8E-32197271IPR003657WRKY domain
PROSITE profilePS5081128.851207273IPR003657WRKY domain
SuperFamilySSF1182909.81E-26210271IPR003657WRKY domain
SMARTSM007741.6E-35212272IPR003657WRKY domain
PfamPF031062.1E-25214270IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MEADESNVCA LSTEIISSSD LQVNEAAQTG LRYAHQFISS ISDQNNLLNS SFIQQSSLIA  60
NEAIKELKKF LFLLDDSTPT SERCSKRVKQ GPLPKIPGIN PKEMIDPSII NSYKLVVPNG  120
CIPVKEFSFI SAKTDVMNRS YSNPVLCMEG SNISSKQIVM QNSMSGILSF SEDASTKCAS  180
SARTCHCTKK RKRREKRKTR VPAISDKIAD IPPDEYCWRK YGQKPIKGSP HPRSYYKCST  240
CKGCPARKQV ERCLQDSSML IVTYEGEHVH STFTFPYSTI TF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-20199270171WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1188193KKRKRR
2188196KKRKRREKR
3190195RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021855941.10.0probable WRKY transcription factor 39
TrEMBLA0A0K9RB190.0A0A0K9RB19_SPIOL; Uncharacterized protein
STRINGXP_010676251.11e-108(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.12e-43WRKY DNA-binding protein 74