PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_086330_pntz.t1
Common NameSOVF_086330
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB
Protein Properties Length: 412aa    MW: 45531 Da    PI: 6.6624
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_086330_pntz.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.86.8e-153077148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g W++eEd++l+++    G g+W+ +ar  g+ R++k+c++rw +yl
  Sp_086330_pntz.t1 30 KGLWSPEEDDKLINYMLTNGQGCWSDVARNAGLQRCGKSCRLRWINYL 77
                       678*******************************************97 PP
2Myb_DNA-binding53.45.9e-1783126146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        rg+++++E+el+++++++lG++ W+ Ia++++ gRt++++k++w++
  Sp_086330_pntz.t1  83 RGAFSPQEEELIIHLHTLLGNR-WSQIAARLP-GRTDNEIKNFWNS 126
                        89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.6662577IPR017930Myb domain
SuperFamilySSF466898.59E-2828124IPR009057Homeodomain-like
SMARTSM007172.3E-112979IPR001005SANT/Myb domain
PfamPF002491.2E-133077IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-223184IPR009057Homeodomain-like
CDDcd001671.30E-93377No hitNo description
PROSITE profilePS5129425.16678132IPR017930Myb domain
SMARTSM007171.2E-1582130IPR001005SANT/Myb domain
PfamPF002496.2E-1583126IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-2685133IPR009057Homeodomain-like
CDDcd001673.38E-1185128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MRKPADPAAK GNNGNGGGGG NVNGGVKLRK GLWSPEEDDK LINYMLTNGQ GCWSDVARNA  60
GLQRCGKSCR LRWINYLRPD LKRGAFSPQE EELIIHLHTL LGNRWSQIAA RLPGRTDNEI  120
KNFWNSTVKK RMKSSSTSSS PNASDSSLST EPRDGMVGGF MAMQDPCSIM AMYVTNNNNN  180
STSPTSSSLQ PMVTLSHHDH HHDHHHGTMD HHHHPFPNMV NHNTTTTTTT ATTTNNIDMP  240
CCGNNGYLDA SSCMSMAPLH GDDHGMMCGS YGMLGGYNHD NNYGLLQGEL SIPSLETISI  300
EENTQVSENI VFGRNNNTTI SNHNHFDNNG SNNHHFDDHN NHHHHHHHHH MISTTNATAT  360
NTPLNNSIIS GVKKFEAVVP GVGNNNWDGG EWDLEELMRD VSSFPFIDYQ VE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-26281345110B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00336DAPTransfer from AT3G08500Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021861859.10.0transcription factor MYB83-like
TrEMBLA0A0K9RB900.0A0A0K9RB90_SPIOL; Uncharacterized protein
STRINGXP_010673636.11e-160(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.15e-53myb domain protein 46