PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_085980_jdts.t1
Common NameSOVF_085980
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family G2-like
Protein Properties Length: 455aa    MW: 49776.9 Da    PI: 6.28
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_085980_jdts.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.37.1e-28198252156
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                        k++++WtpeLH+rFv+aveqL G +kA+P++ilelm++++Lt+++++SHLQkYR++
  Sp_085980_jdts.t1 198 KTKVDWTPELHRRFVQAVEQL-GVDKAVPSRILELMGIDCLTRHNIASHLQKYRSH 252
                        6799*****************.********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.937195254IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.8E-27196255IPR009057Homeodomain-like
SuperFamilySSF466898.6E-19196255IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-26198252IPR006447Myb domain, plants
PfamPF002495.0E-8201250IPR001005SANT/Myb domain
PROSITE patternPS000740275288IPR033524Leu/Phe/Val dehydrogenases active site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007165Biological Processsignal transduction
GO:0009658Biological Processchloroplast organization
GO:0009910Biological Processnegative regulation of flower development
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0010638Biological Processpositive regulation of organelle organization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MLAISPLSSN KDENNNGGTT MAEGNFSMGT DDFPDFSGAN LLDSIDFDEL FMGMHDGDVL  60
PDLEMDPELL AEFSLSSGGY DDSTSEANNS PSSGMSTENN VISPMDDASF DAAIYQGNYN  120
NDDVVSLVLE EESMEKHDQS PGFMSNKTPE EVEIVSKNDA KSESATTMTK ISSSKESHKG  180
KKSKSGANNN NHHHGKRKTK VDWTPELHRR FVQAVEQLGV DKAVPSRILE LMGIDCLTRH  240
NIASHLQKYR SHRKHLLARE AEAASWTQKR QMYGVAMGGG KGGANISPWY PPTMGFPPMT  300
TMHPPFRPLH VWGHPTMDRQ ARVPMWPKQI APTATPLPHA WAPPPLHPPP TDTSFWHSPH  360
QRRVAVAPVP GIPPHTMYRP DQHGLPPPPA AQSGPHPPLD LHPSKESIDS AIGDVISKPW  420
LPLPIGLKPP SMDSVMVELQ RQGIPKIPPS NSAAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-16195250257ARR10-B
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00022PBMTransfer from AT2G20570Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021848304.10.0transcription activator GLK1-like
TrEMBLA0A0K9RD600.0A0A0K9RD60_SPIOL; Uncharacterized protein
STRINGXP_010689788.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.24e-69GBF's pro-rich region-interacting factor 1