PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_085630_fshk.t1
Common NameSOVF_085630
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family TALE
Protein Properties Length: 375aa    MW: 42112.8 Da    PI: 7.0005
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_085630_fshk.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox291.8e-092933272155
                        HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
           Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                        k +yps++++  LA+++gL+++q+ +WF N+R ++
  Sp_085630_fshk.t1 293 KWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 327
                        569*****************************885 PP
2ELK39.98.6e-14247268122
                ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                        ELK qLlrKYsgyLgsL+qEF+
  Sp_085630_fshk.t1 247 ELKGQLLRKYSGYLGSLRQEFL 268
                        9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.6E-18101145IPR005540KNOX1
PfamPF037909.5E-23103139IPR005540KNOX1
SMARTSM012566.5E-26156207IPR005541KNOX2
PfamPF037911.8E-20160206IPR005541KNOX2
SMARTSM011887.4E-8247268IPR005539ELK domain
PROSITE profilePS5121311.366247267IPR005539ELK domain
PfamPF037891.1E-10247268IPR005539ELK domain
PROSITE profilePS5007112.924267330IPR001356Homeobox domain
SuperFamilySSF466896.42E-20269343IPR009057Homeodomain-like
SMARTSM003892.2E-13269334IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.3E-28272332IPR009057Homeodomain-like
CDDcd000861.54E-12279331No hitNo description
PfamPF059206.8E-17287326IPR008422Homeobox KN domain
PROSITE patternPS000270305328IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009934Biological Processregulation of meristem structural organization
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MENDNNNNNN SNGLYPMIMM QPPSLSHHHH HQHHHNSNHH NNNNHNNNKL CCCSSSSSVT  60
VAAAAAAAEC YDNHQHHQQQ HQQQLMGLGM ENLTSSSNNG GNIKAKIMSH PHYPRLLSAF  120
VNCQKVGAPP EVVARLEEAE TMMMNQGGGR GGGSGGGGYI GEDPGLDQFM EAYCEMLGKY  180
EQELTKPFKE AMLFLSRIEC QFKALTLTSP SHSPSSACGE IPDRNGSSEE DIDVNNNFID  240
PSAEDRELKG QLLRKYSGYL GSLRQEFLKK RKKGKLPKEA RQELLDWWSR HYKWPYPSES  300
QKLALAESTG LDQKQINNWF INQRKRHWKP SEDMQFVVMD AASHSHAHSH AHSHYGGYMD  360
NVLGPPYPMD VSSTL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1262271LRQEFLKKRK
2268272KKRKK
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021854196.10.0homeobox protein knotted-1-like LET6
SwissprotP466081e-128HSBH1_SOYBN; Homeobox protein SBH1
TrEMBLA0A0K9RBF50.0A0A0K9RBF5_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010686774.11e-151(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.11e-114KNOX/ELK homeobox transcription factor
Publications ? help Back to Top
  1. Shu Y, et al.
    GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean.
    Plant Cell Rep., 2015. 34(11): p. 1927-37
    [PMID:26205508]