PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_083610_stuc.t1
Common NameSOVF_083610
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 331aa    MW: 36784.7 Da    PI: 6.0936
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_083610_stuc.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH421.7e-134291255
                       HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                       r +h+  E+rRR++iN++f+ Lr+l+P+     + K + a+ L +++eY++ Lq
  Sp_083610_stuc.t1 42 RSKHSVTEQRRRSKINERFQILRDLIPHG----DLKRDTASFLLEVIEYVQILQ 91
                       889*************************7....79***************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.02E-1638111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-1939112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.1864090IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.4E-114291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.58E-134295No hitNo description
SMARTSM003536.4E-104696IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MKSSKGNNLE DDEEYDEDFT SKKEPSSSNK DAKNNDKASA MRSKHSVTEQ RRRSKINERF  60
QILRDLIPHG DLKRDTASFL LEVIEYVQIL QEKLQKYEGP YQGWSTEPTK LVPWRHNHWR  120
VQSILGHPQT VIKNGPNSAS TFSGQFDERS FSSNPSVTAD GQTRVDADSG HETFRTLDQQ  180
SELVEKAATM AMPTPFPLHM PAIIQHDGDD PHLSQRPASD VLLSARCPNS CDDQQGQHKI  240
EGGTINISSS YSHGLLMTLT QALQSSGVDL SEASISIQVD LGKRANKSLV PGISDANKEM  300
ENSASRDLNM GRVGDGSGME ELEQPHKKLK S
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021858615.10.0transcription factor BIM2
SwissprotQ9CAA44e-91BIM2_ARATH; Transcription factor BIM2
TrEMBLA0A0K9RDJ70.0A0A0K9RDJ7_SPIOL; Uncharacterized protein
STRINGXP_010681151.11e-170(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.12e-89BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]