PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_083280_yewa.t1
Common NameSOVF_083280
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family HD-ZIP
Protein Properties Length: 766aa    MW: 85421.9 Da    PI: 6.0342
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_083280_yewa.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.82.2e-1984139156
                        TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        r++ +++t++q++eLe++F+++ +p++++r e+ ++l+L+ rqVk+WFqNrR+++k
  Sp_083280_yewa.t1  84 RKRYHRHTPQQIQELENFFKNCAHPDEKQRLEIGRRLSLESRQVKFWFQNRRTQMK 139
                        789999***********************************************999 PP
2START155.64e-492845026204
                        HHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS
              START   6 aaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 
                         ++el+ +a+ ++p+W+k      e++n +e+++kf++  +     + ++a+r++  v+  + +lve+++  + qW+ +++    ka+t+ev
  Sp_083280_yewa.t1 284 GMDELLGMAQTDSPLWFKGLddgkEMLNHEEYIKKFSTFIGmkpcgFVTDASRETSSVFISSLELVETMMFPR-QWQDMFPcmisKAATVEV 374
                        5899********************************88666**********************9999988888.****************** PP

                        ECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE CS
              START  85 issg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwve 168
                        + sg      g++qlm+ae++++sp vp R   ++R+++q+++g w++vdvSvd  ++p+   s+ ++ ++lpSg+++++++ng+s vtw+e
  Sp_083280_yewa.t1 375 LFSGaggtrdGEIQLMNAEFVFPSPFVPfRHEKILRFCKQHSEGMWAVVDVSVDMIRDPSFsRSNNIKWRRLPSGCIVQDVANGYSLVTWIE 466
                        ***********************************************************9999***************************** PP

                        -EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
              START 169 hvdlkgrlphwllrslvksglaegaktwvatlqrqc 204
                        hv+++++ +h+l+r+l++sg+ +  ++w++tlqr +
  Sp_083280_yewa.t1 467 HVEYDENCIHQLYRPLLRSGMGFSSQRWLSTLQRER 502
                        *********************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.61E-1965141IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-1972141IPR009057Homeodomain-like
PROSITE profilePS5007117.0781141IPR001356Homeobox domain
SMARTSM003892.4E-1782145IPR001356Homeobox domain
CDDcd000863.95E-1783141No hitNo description
PfamPF000465.9E-1784139IPR001356Homeobox domain
SuperFamilySSF559616.81E-23270500No hitNo description
PROSITE profilePS5084835.238270507IPR002913START domain
CDDcd088751.00E-90274500No hitNo description
SMARTSM002341.5E-31279504IPR002913START domain
PfamPF018528.3E-42284502IPR002913START domain
SuperFamilySSF559615.49E-14525709No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 766 aa     Download sequence    Send to blast
MERQQEEMGF YGDQFDPNNI IMGRDNNNNN NINNNNSNNI NNNNSNNIKE DSGSENYESV  60
SVSVGDVPEP EPEGASQIKT KGRRKRYHRH TPQQIQELEN FFKNCAHPDE KQRLEIGRRL  120
SLESRQVKFW FQNRRTQMKT QIERHENVAL KQEYDKLRVE NIAMKDALRN PMCQNCGGQA  180
ILGEVSMEQH HLRVENARLK DELTRVCAVS ERFLGKPITD LVGPISIPTS NSNSNLDLSM  240
GRGGLMSSTP PLPLGLHLEN GVSSNSTMTT EYEKSMFMQA AMAGMDELLG MAQTDSPLWF  300
KGLDDGKEML NHEEYIKKFS TFIGMKPCGF VTDASRETSS VFISSLELVE TMMFPRQWQD  360
MFPCMISKAA TVEVLFSGAG GTRDGEIQLM NAEFVFPSPF VPFRHEKILR FCKQHSEGMW  420
AVVDVSVDMI RDPSFSRSNN IKWRRLPSGC IVQDVANGYS LVTWIEHVEY DENCIHQLYR  480
PLLRSGMGFS SQRWLSTLQR ERDCAAIFMS ARVLPDDTTV GVVTQEGRRS ILKLMRRISN  540
NFCSGLCASS ACRWEKLQVG GLGADVCVMS RVSIDEPGEP SGVVLSASTS VWIPVPRQHI  600
FDFLRDEKLR GKWDILANGG PMEVIARLAK SHDGNNCVSL LCPPAAPARE SNMLILQESW  660
TDRTGSFIVY APVDSTSMET VLRGGDSDYL ALLPSGFAIA DAPINPNGLT LAHDSGPGAG  720
TGASALTLGF QILVNSLPTA KLTVESINTV NDLMSCTIQK IRNSLN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021842104.10.0homeobox-leucine zipper protein ROC5-like isoform X2
SwissprotQ6EPF00.0ROC5_ORYSJ; Homeobox-leucine zipper protein ROC5
TrEMBLA0A0K9RDL30.0A0A0K9RDL3_SPIOL; Uncharacterized protein
STRINGXP_010693469.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61150.10.0homeodomain GLABROUS 1
Publications ? help Back to Top
  1. Zou LP, et al.
    Leaf rolling controlled by the homeodomain leucine zipper class IV gene Roc5 in rice.
    Plant Physiol., 2011. 156(3): p. 1589-602
    [PMID:21596949]
  2. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]