PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_083180_dggx.t2
Common NameSOVF_083180
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family NF-YA
Protein Properties Length: 313aa    MW: 35115.1 Da    PI: 8.5582
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_083180_dggx.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA851.2e-26147202158
          CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                        d p+YVN+KQy++Il+RR++Rak   +++   ++ kpy+heSRh+hA+rR+Rg gGrF
  Sp_083180_dggx.t2 147 DGPIYVNPKQYHGILRRRKMRAKEGMKNRS--TKDKPYVHESRHRHACRRARGAGGRF 202
                        57************************8887..899**********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005217.2E-27145205IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115230.348146205IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.4E-19149171IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.6E-23149202IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.4E-19179202IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MQKSATNRQI SCIGSMPWWV AAGPQDEQIN SPNLNQIDWV GEHQKSQHVM SGTPEKEKQG  60
AFQLSFSAEE NNNSLKEING HDHQSNSFKH FSPPQQKSYV ELGLGQPMVS DVYANYPIVD  120
HCHGLFAVYG TQPTGRAMLP FSVTTEDGPI YVNPKQYHGI LRRRKMRAKE GMKNRSTKDK  180
PYVHESRHRH ACRRARGAGG RFLNTKNHEN EKSKEETKKI SEQLTFPCSH SSGSEVVQSD  240
GGNLNSSKEI SDCKSSNFSS SEVTSMYYNK EFDCFGINPG RPFAIHPLQN MEGSRQGGNW  300
VTVVDGCCNL FKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A1e-13147203260HAPB protein
4g92_A1e-13147203260HAPB protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186195RHRHACRRAR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021859870.10.0nuclear transcription factor Y subunit A-10-like isoform X1
RefseqXP_021859871.10.0nuclear transcription factor Y subunit A-10-like isoform X1
TrEMBLA0A0K9RC880.0A0A0K9RC88_SPIOL; Uncharacterized protein
STRINGXP_010695104.11e-165(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.24e-22nuclear factor Y, subunit A10