PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_083180_dggx.t1 | ||||||||
Common Name | SOVF_083180 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | NF-YA | ||||||||
Protein Properties | Length: 310aa MW: 34813.8 Da PI: 8.7168 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 85 | 1.2e-26 | 144 | 199 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVN+KQy++Il+RR++Rak +++ ++ kpy+heSRh+hA+rR+Rg gGrF Sp_083180_dggx.t1 144 DGPIYVNPKQYHGILRRRKMRAKEGMKNRS--TKDKPYVHESRHRHACRRARGAGGRF 199 57************************8887..899**********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 7.2E-27 | 142 | 202 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 30.348 | 143 | 202 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 3.5E-23 | 146 | 199 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 2.4E-19 | 146 | 168 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 2.4E-19 | 176 | 199 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009567 | Biological Process | double fertilization forming a zygote and endosperm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MQKSATNRQI SCIGSMPWWV AAGPQDEQIN SPNLNQIDWV GEHQKSQHVM SGTPEKEKQG 60 AFQLSFSAEE NNNSLKEING HDHQSNSFKH FSPPQQKSYV ELGLGQPMVY ANYPIVDHCH 120 GLFAVYGTQP TGRAMLPFSV TTEDGPIYVN PKQYHGILRR RKMRAKEGMK NRSTKDKPYV 180 HESRHRHACR RARGAGGRFL NTKNHENEKS KEETKKISEQ LTFPCSHSSG SEVVQSDGGN 240 LNSSKEISDC KSSNFSSSEV TSMYYNKEFD CFGINPGRPF AIHPLQNMEG SRQGGNWVTV 300 VDGCCNLFKV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_A | 1e-13 | 144 | 200 | 2 | 60 | HAPB protein |
4g92_A | 1e-13 | 144 | 200 | 2 | 60 | HAPB protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 183 | 192 | RHRHACRRAR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021859872.1 | 0.0 | nuclear transcription factor Y subunit A-10-like isoform X2 | ||||
TrEMBL | A0A0K9RCB1 | 0.0 | A0A0K9RCB1_SPIOL; Uncharacterized protein | ||||
STRING | XP_010695104.1 | 1e-167 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06510.2 | 4e-24 | nuclear factor Y, subunit A10 |