PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_080250_frhe.t1
Common NameSOVF_080250
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family WRKY
Protein Properties Length: 292aa    MW: 31944.2 Da    PI: 5.9981
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_080250_frhe.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.61.7e-3079137259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dpk+++itY  eHnh 
  Sp_080250_frhe.t1  79 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRVDPKMLIITYACEHNHA 137
                        69*************************998****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.1E-3271139IPR003657WRKY domain
SuperFamilySSF1182901.11E-2574139IPR003657WRKY domain
SMARTSM007744.5E-3678138IPR003657WRKY domain
PROSITE profilePS5081132.35179139IPR003657WRKY domain
PfamPF031061.3E-2580136IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MVMDNRHRMS SYVSHEQDDP QSSSENGAPD SPFSGDDSRA TATAPSPKKS RRSIQKRVVS  60
IPIGDVDGSR SKGESYPPSD SWAWRKYGQK PIKGSPYPRG YYRCSSSKGC PARKQVERSR  120
VDPKMLIITY ACEHNHALPT TKHHHHHHNN HNQTPPPSNA VTSSVPSPET PPASITPSDS  180
TEDGSEEPSP SPSSPLHMNP FGDPPHLEFV GDTLMLGNIG IEYNWISDLS FYTPALVGPK  240
CDDTDVATFP MKEEDESLFG DLDELPECSL VFRHAQGSID TCTTATPICG ST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-2056140680Disease resistance protein RRS1
5w3x_D1e-2056140680Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1445361e-39BT144536.1 Medicago truncatula clone JCVI-FLMt-4P21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021843801.10.0probable WRKY transcription factor 65
TrEMBLA0A0K9RD040.0A0A0K9RD04_SPIOL; Uncharacterized protein
STRINGXP_010689722.11e-155(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58710.12e-54WRKY DNA-binding protein 69