PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_079960_puqw.t1

Common Name

SOVF_079960

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

bHLH

Protein Properties

Length: 348aa MW: 38458.9 Da PI: 5.2597

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_079960_puqw.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.5	6.5e-10	141	187	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h +Er+RR+ + + f L +++P + kK +K +iL +A++++k+Lq Sp_079960_puqw.t1 141 DHILAERKRREVLGHMFISLSTMIPGL-----KKIDKTSILGEAIKHMKHLQ 187 6899*********************.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.363	137	186	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-12	141	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.37E-14	141	200	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.1E-8	141	187	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.19E-9	142	190	No hit	No description
SMART	SM00353	2.7E-10	143	192	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MEIQTVPSLI NNSHNEYNQS ETTEAASFDE QLTAALLGED FPYPLPAKNC TTYPDQSHWD 60 FEYDLVDQFI TPPSYSSNSS ASYDYDNNNN NYDDVNDNTM VSPGVQEPGR QSKKRKEVIT 120 EKQAVNGGTR KRKRHPSQVQ DHILAERKRR EVLGHMFISL STMIPGLKKI DKTSILGEAI 180 KHMKHLQEKV NVLEKVSAQQ KSARSSMVVV KKYQLGVEND DSDDTGNGSS SIVSDNSASD 240 SGGGGGCGSN GDSSNNAMNL NNSIPEIEVK ITDETLLLKV YCETQNGVMA KLLKVVENHH 300 LSVTNCSLLP FDKLALDITI VAQIQEGFDM NVKDFVRSIR SVLRPAGI

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MEIQTVPSLI NNSHNEYNQS ETTEAASFDE QLTAALLGED FPYPLPAKNC TTYPDQSHWD  60
FEYDLVDQFI TPPSYSSNSS ASYDYDNNNN NYDDVNDNTM VSPGVQEPGR QSKKRKEVIT  120
EKQAVNGGTR KRKRHPSQVQ DHILAERKRR EVLGHMFISL STMIPGLKKI DKTSILGEAI  180
KHMKHLQEKV NVLEKVSAQQ KSARSSMVVV KKYQLGVEND DSDDTGNGSS SIVSDNSASD  240
SGGGGGCGSN GDSSNNAMNL NNSIPEIEVK ITDETLLLKV YCETQNGVMA KLLKVVENHH  300
LSVTNCSLLP FDKLALDITI VAQIQEGFDM NVKDFVRSIR SVLRPAGI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	131	149	RKRHPSQVQDHILAERKRR
2	145	150	ERKRRE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021856513.1	0.0	transcription factor bHLH18-like isoform X1
Refseq	XP_021856514.1	0.0	transcription factor bHLH18-like isoform X2
TrEMBL	A0A0K9REP1	0.0	A0A0K9REP1_SPIOL; Uncharacterized protein
STRING	XP_010683069.1	1e-92	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	5e-41	bHLH family protein