PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_079960_puqw.t1 | ||||||||
Common Name | SOVF_079960 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | bHLH | ||||||||
Protein Properties | Length: 348aa MW: 38458.9 Da PI: 5.2597 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.5 | 6.5e-10 | 141 | 187 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h +Er+RR+ + + f L +++P + kK +K +iL +A++++k+Lq Sp_079960_puqw.t1 141 DHILAERKRREVLGHMFISLSTMIPGL-----KKIDKTSILGEAIKHMKHLQ 187 6899***********************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.363 | 137 | 186 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-12 | 141 | 199 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.37E-14 | 141 | 200 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.1E-8 | 141 | 187 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.19E-9 | 142 | 190 | No hit | No description |
SMART | SM00353 | 2.7E-10 | 143 | 192 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MEIQTVPSLI NNSHNEYNQS ETTEAASFDE QLTAALLGED FPYPLPAKNC TTYPDQSHWD 60 FEYDLVDQFI TPPSYSSNSS ASYDYDNNNN NYDDVNDNTM VSPGVQEPGR QSKKRKEVIT 120 EKQAVNGGTR KRKRHPSQVQ DHILAERKRR EVLGHMFISL STMIPGLKKI DKTSILGEAI 180 KHMKHLQEKV NVLEKVSAQQ KSARSSMVVV KKYQLGVEND DSDDTGNGSS SIVSDNSASD 240 SGGGGGCGSN GDSSNNAMNL NNSIPEIEVK ITDETLLLKV YCETQNGVMA KLLKVVENHH 300 LSVTNCSLLP FDKLALDITI VAQIQEGFDM NVKDFVRSIR SVLRPAGI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 131 | 149 | RKRHPSQVQDHILAERKRR |
2 | 145 | 150 | ERKRRE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021856513.1 | 0.0 | transcription factor bHLH18-like isoform X1 | ||||
Refseq | XP_021856514.1 | 0.0 | transcription factor bHLH18-like isoform X2 | ||||
TrEMBL | A0A0K9REP1 | 0.0 | A0A0K9REP1_SPIOL; Uncharacterized protein | ||||
STRING | XP_010683069.1 | 1e-92 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 5e-41 | bHLH family protein |