PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_079940_dkpr.t1
Common NameSOVF_079940
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C3H
Protein Properties Length: 935aa    MW: 101036 Da    PI: 8.9766
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_079940_dkpr.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.95.3e-06523543526
                        --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                        +Cr+++  G C+ G++CkF+H+
  Sp_079940_dkpr.t1 523 PCRHYLN-GRCQEGEKCKFSHD 543
                        8**9999.*************7 PP
2zf-CCCH18.14.6e-06577597525
                        --SGGGGTS--TTTTT-SS-S CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                        +C+ f  tG+C++Gd C F+H
  Sp_079940_dkpr.t1 577 PCNSFVTTGFCNRGDICLFSH 597
                        7******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.441518545IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-4519544IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-6519543IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-4522543IPR000571Zinc finger, CCCH-type
SMARTSM003560.0028547573IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.493547574IPR000571Zinc finger, CCCH-type
SMARTSM003560.68575599IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-4577598IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.822577600IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 935 aa     Download sequence    Send to blast
MDNNSIDGVP SNDSIRELFG PPPPRRPIPS NSFNALVKIF SLFSDQNPFS ECVSYAQIPE  60
YSKQCVDNPN DSRRLLSDDI HSDVVVPRGE KEASNGLAGF DSVGDHDVNS EGISGDFSND  120
IGLSGSKLIL DELGRENKNK TLEKVPYDEE GTGIERAEVD KVHAELSGIE RILMDESDNF  180
DVLQQPDKDA DFDFLNDFSC ILDTDVCVNK SMTVESNSSE KLIAVDRNTK EDAAGEKKRK  240
DVEVNLSTSG GDGAKTHTHL PVVREISDCQ EVVNQSVGTC PGEGQRKKRK LCKEKAPQDL  300
SEFGGLTFAA QKSNNAGGTV SNSITKGNKV GVAAKEKTKK VKDTFHTSAK DVNSGKSKLL  360
VVSGETSYNM KSGDADPIVR GKMAKQNTKR KDGNARPKTC VKFHYSREEL LNLRKITSFP  420
EDILKLAREM DAEVHGKYQK SAAGKLTDVG GAKKEKLSTS TEDKMTEEEG SSILKHKKRG  480
TSSEARKEKK KQKRRKKRAE MNKKHGIKRL ILTPIVKPKV IQPCRHYLNG RCQEGEKCKF  540
SHDVVPLTKS KPCCHFARQA CMKGDDCPYD HQLSKYPCNS FVTTGFCNRG DICLFSHKIS  600
AKEGSETAAA VSKCEATSLD QLDKSNSKQL LNAKASFSSG IVATQTSHQA KAPKGLSFLP  660
SGKSSSPKDS VGGGADAGTI TQPNTATTAF NLIKGLIDTP ASDTPQGTDF ISIVKSSVGN  720
LGDKKQASPL LHRDNSRFCS FGKSGDDSSH RSVDTAGTSS QLNKGIMPSR VQSVCRMLET  780
NPAPLSPKNN SNGPFFNRWS CSKQISVPSS GGPPYDNSGG KSQVDSQIRE KESANGSEKA  840
AIQPKLWDSP TSGQCSTKAV GVKNTPSTSQ RALLSALSFA AKYESGIKMT TSAGSAKEVT  900
KNEGKISSDS GCKQNEPSKA SAILEFLYSG GNKEK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1476497KKRGTSSEARKEKKKQKRRKKR
2485497RKEKKKQKRRKKR
3489497KKQKRRKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021837936.10.0uncharacterized protein LOC110777653 isoform X1
TrEMBLA0A0K9REP90.0A0A0K9REP9_SPIOL; Uncharacterized protein
STRINGXP_010696517.10.0(Beta vulgaris)