PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

C3H

Protein Properties

Length: 693aa MW: 77701.7 Da PI: 6.6225

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_079470_qhfc.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18	5.1e-06	109	133	5	26
--SGGGGTS...--TTTTT-SS-SS CS zf-CCCH 5 lCrffartG...tCkyGdrCkFaHg 26 lC+ artG C y d+C+F+H+ Sp_079470_qhfc.t1 109 LCPSVARTGeisSCIYADKCRFSHD 133 8***********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	10.474	104	135	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.418	148	173	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:3.20.20.70	9.1E-74	337	580	IPR013785	Aldolase-type TIM barrel
SuperFamily	SSF51395	4.83E-63	341	654	No hit	No description
CDD	cd02801	4.52E-93	341	576	No hit	No description
Pfam	PF01207	4.8E-51	344	612	IPR001269	tRNA-dihydrouridine synthase
PROSITE pattern	PS01136	0	425	443	IPR018517	tRNA-dihydrouridine synthase, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0002943	Biological Process	tRNA dihydrouridine synthesis
GO:0055114	Biological Process	oxidation-reduction process
GO:0017150	Molecular Function	tRNA dihydrouridine synthase activity
GO:0046872	Molecular Function	metal ion binding
GO:0050660	Molecular Function	flavin adenine dinucleotide binding

Sequence ? help Back to Top
Protein Sequence Length: 693 aa Download sequence Send to blast
MGEPPELTQA VMDESETEAG KSENTQTQSP PARFNGMQLS TEELISKSIA PVKKEFLRPP 60 PTSRSTTSDS KDDYANSEAP RSSGMIQEKK SKRQLKRERH EKLKSALNLC PSVARTGEIS 120 SCIYADKCRF SHDLEAYKSQ RPADLEGECP FTYAQKPCPY GVTCRFYGTH KDATNENLDA 180 LKEGSEINML KKDVQRLLWK NNMKFPKSNA VLKQLGVEGR GHTRVKDSEE EESIVPDGSH 240 CSEDKGCEKY DSSDKHGASA VLPEEPLGSD DRRPLKKSKS DIDERNSSND LNNGTSVTVE 300 GLVKDSTKDE SPITNDQLPP ETDASLKFHP RERKLIDFRG KLYLAPLTTV GNLPFRRVCK 360 DFGADVTCGE MAMCTNLLEG QASEWALLRR HKSENLFGVQ ICGAYPDTVA RAVELIDQEC 420 SLDFIDINMG CPIDMVVNKG AGSALLTKPL RMKNAIQAAC ASAEKPITVK VRTGYIEGRN 480 RADSLISQIY EWGASAVTVH GRSRQQRYSK LADWEYINTC VKKAPASLQV LGNGDVFSYL 540 DWNKHFSDCP ELSSCMIARG ALVKPWLFTE IKEQRHWDIS SGERLDILKD YVRFGLEHWG 600 SDSKGVETTR HFLLQWLSYT FRYIPVGLLE VVPQQINWRP PSYYCRNDLE TLMASESAAD 660 WIRISEMLLG KVPLDFKFAP KHKSNAYDSA ENG

Sequence ? help Back to Top

Protein Sequence Length: 693 aa Download sequence Send to blast

MGEPPELTQA VMDESETEAG KSENTQTQSP PARFNGMQLS TEELISKSIA PVKKEFLRPP  60
PTSRSTTSDS KDDYANSEAP RSSGMIQEKK SKRQLKRERH EKLKSALNLC PSVARTGEIS  120
SCIYADKCRF SHDLEAYKSQ RPADLEGECP FTYAQKPCPY GVTCRFYGTH KDATNENLDA  180
LKEGSEINML KKDVQRLLWK NNMKFPKSNA VLKQLGVEGR GHTRVKDSEE EESIVPDGSH  240
CSEDKGCEKY DSSDKHGASA VLPEEPLGSD DRRPLKKSKS DIDERNSSND LNNGTSVTVE  300
GLVKDSTKDE SPITNDQLPP ETDASLKFHP RERKLIDFRG KLYLAPLTTV GNLPFRRVCK  360
DFGADVTCGE MAMCTNLLEG QASEWALLRR HKSENLFGVQ ICGAYPDTVA RAVELIDQEC  420
SLDFIDINMG CPIDMVVNKG AGSALLTKPL RMKNAIQAAC ASAEKPITVK VRTGYIEGRN  480
RADSLISQIY EWGASAVTVH GRSRQQRYSK LADWEYINTC VKKAPASLQV LGNGDVFSYL  540
DWNKHFSDCP ELSSCMIARG ALVKPWLFTE IKEQRHWDIS SGERLDILKD YVRFGLEHWG  600
SDSKGVETTR HFLLQWLSYT FRYIPVGLLE VVPQQINWRP PSYYCRNDLE TLMASESAAD  660
WIRISEMLLG KVPLDFKFAP KHKSNAYDSA ENG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ei9_A	9e-28	338	585	27	266	tRNA-dihydrouridine synthase B
6ei9_B	9e-28	338	585	27	266	tRNA-dihydrouridine synthase B
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Functional Description ? help Back to Top
Source	Description
UniProt	Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021848055.1	0.0	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like isoform X4
Swissprot	Q9T0J6	0.0	DUS3L_ARATH; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
TrEMBL	A0A0K9RD76	0.0	A0A0K9RD76_SPIOL; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
STRING	XP_010665864.1	0.0	(Beta vulgaris)

Publications ? help Back to Top
Szponarski W,Sommerer N,Boyer JC,Rossignol M,Gibrat R Large-scale characterization of integral proteins from Arabidopsis vacuolar membrane by two-dimensional liquid chromatography. Proteomics, 2004. 4(2): p. 397-406 [PMID:14760709]