PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_079390_kohp.t1
Common NameSOVF_079390
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB
Protein Properties Length: 1033aa    MW: 116041 Da    PI: 4.8254
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_079390_kohp.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding431e-13853248
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       g W   Ede+l+ av ++G+++W++I++ +  ++++kqck rw+ +l
  Sp_079390_kohp.t1  8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53
                       78*****************************.************986 PP
2Myb_DNA-binding32.71.7e-1060103248
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          WT eEde+l+++ k++++  W+tIa  +g  Rt+ qc +r+ k+l
  Sp_079390_kohp.t1  60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103
                        68*****************99.********8..**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.008257IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.9E-18556IPR009057Homeodomain-like
SMARTSM007177.0E-15655IPR001005SANT/Myb domain
PfamPF139215.3E-131070No hitNo description
CDDcd001678.02E-121053No hitNo description
SuperFamilySSF466895.75E-2133109IPR009057Homeodomain-like
CDDcd116596.52E-3155106No hitNo description
Gene3DG3DSA:1.10.10.603.6E-1457104IPR009057Homeodomain-like
PROSITE profilePS5129416.44358107IPR017930Myb domain
SMARTSM007171.7E-1258105IPR001005SANT/Myb domain
PfamPF118314.0E-59407650IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009870Biological Processdefense response signaling pathway, resistance gene-dependent
GO:0010204Biological Processdefense response signaling pathway, resistance gene-independent
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1033 aa     Download sequence    Send to blast
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACTKD DNYEPGDDPR  120
KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR  180
LASLQKRREL KAAGIDPRQR KRKRKGIDYN AEIPFEKRAP AGFYDVAEED RPVEQPKFPT  240
TIDELEGERR VDREARLRKQ DIAKNKIAER QDAPGAIMQA NKLNDPETVR KRSKLMLPPP  300
QISDQELEEI ARMGYASDLL VGNQELAEGS GATHALLANY SQTPRQGMTP MRTPQRTPAG  360
KGDAIMMEAE NLARLRESQT PLLGGDNPEL HPSDFSGVTP KKRDVQTPNP MLTPSATPGG  420
AGLTPRIGMT PSRDGSSFGM TPKGTPIRDE LRINEELDMH DSAKLELRRQ AELKRNLRTG  480
LSGLPEPKNE YEVVVRPAPE DTEEPEEKIE EDMSDRIARE RAAEEARQQA LLRKRSKVLQ  540
RELPRPPVAS VELIRHSLMR AGEDKSSFVP PTDIEQADEI VRKELLSLLE HDNAKYPLND  600
KVQKKGSKRS ANGVPIIEEF EEDVLKEAAS FIKEEAQYLC VAMGHQEETL DNFVEAHNTC  660
LNDLMYFPTR NAYGLSSVAG TVEKLAALRN EFENVKRKMD DDNKKAQRLE KKIDVLTHGY  720
KMRADKLKTQ IELTFKQMNT GGTELDCFLA LQRQENLAAS YRIKGLWEEV QKQKEVEKTL  780
QKRYGERVAE QERVQQVMDQ YRLQAQQLEE IEVKKRTEEL AAFVAKEASF LKSIAPEPSS  840
TTEVDDSSNF AVPKHVEEAP EVSLQNDIHV DGDVASNADI KSNSLASETP LEDSSKESEA  900
AKEQNVDDNT NVVDGNLENS DEAAKEQNVD DNSNVVDGNL ENSDEAAKEQ NVDNTNVVDG  960
NLENSDEAAK EQNAGEAVEN NGFVNGEPVI EAQGVDGKLG SQINKAEEGN ETMTEDAGNP  1020
VESVENGASD NLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L0.027953799Cell division cycle 5-like protein
5xjc_L0.027953799Cell division cycle 5-like protein
5yzg_L0.027953799Cell division cycle 5-like protein
5z56_L0.027953799Cell division cycle 5-like protein
5z57_L0.027953799Cell division cycle 5-like protein
5z58_L0.027953799Cell division cycle 5-like protein
6ff4_L0.027953799Cell division cycle 5-like protein
6ff7_L0.027953799Cell division cycle 5-like protein
6icz_L0.027953799Cell division cycle 5-like protein
6id0_L0.027953799Cell division cycle 5-like protein
6id1_L0.027953799Cell division cycle 5-like protein
6qdv_O0.027953799Cell division cycle 5-like protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185204KRRELKAAGIDPRQRKRKRK
2199204RKRKRK
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00028SELEXTransfer from AT1G09770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021847514.10.0cell division cycle 5-like protein isoform X1
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLA0A0K9RDE10.0A0A0K9RDE1_SPIOL; Uncharacterized protein
STRINGXP_010674469.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.10.0cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]