PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_079380_auas.t1
Common NameSOVF_079380
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB
Protein Properties Length: 418aa    MW: 48177.9 Da    PI: 8.7977
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_079380_auas.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.98.5e-12853248
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       g W   Ede l+ ++ ++G+++W +I++ +  ++++kqck rw+ +l
  Sp_079380_auas.t1  8 GVWKNSEDETLKALIMKYGKNQWPRISSLLV-RKSAKQCKARWYEWL 53
                       78*****************************.************986 PP
2Myb_DNA-binding26.61.4e-0860103248
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqkyl 48 
                          WT+eEde+l++  k++++  W+t     +  gRt+ qc +r+ k+l
  Sp_079380_auas.t1  60 TEWTKEEDEKLLHIAKLMPNQ-WRT---GAPiVGRTPSQCLERYEKLL 103
                        68*****************99.***...444448**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.989257IPR017930Myb domain
SMARTSM007171.9E-13655IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-18960IPR009057Homeodomain-like
PfamPF139216.4E-131070No hitNo description
CDDcd001671.05E-101053No hitNo description
SuperFamilySSF466893.63E-1933109IPR009057Homeodomain-like
CDDcd116591.19E-2855106No hitNo description
SMARTSM007176.5E-958105IPR001005SANT/Myb domain
PROSITE profilePS5129413.25458107IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.5E-1361104IPR009057Homeodomain-like
PfamPF118311.4E-20312416IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MRIMIKGGVW KNSEDETLKA LIMKYGKNQW PRISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTKEEDEKL LHIAKLMPNQ WRTGAPIVGR TPSQCLERYE KLLDAACTKD DNYEPGDDPR  120
KLRPGDIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEASR  180
LASLQKRREL KAAGIDVTQR KRKSKGIDYN VEIPFEKRAP PGFYDVAEED RPVEQPKFPT  240
TIDELEGERR VDREALLRKQ DIVKNKISER QDAPGAIIQA NKLNDPETVR KRSKLMLPPP  300
QISDQELDEI ARIGMIPSRH GSSFGITRKG TLIRDELRIN EELDMHNSAK LELRRQAELK  360
RNLRMGLSGL PEPKNEYEIV VCPAPEDTEE PEEKIEEDIS DRIARERAAE VARQQALT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L1e-13123313334Cell division cycle 5-like protein
5xjc_L1e-13123313334Cell division cycle 5-like protein
5yzg_L1e-13123313334Cell division cycle 5-like protein
5z56_L1e-13123313334Cell division cycle 5-like protein
5z57_L1e-13123313334Cell division cycle 5-like protein
5z58_L1e-13123313334Cell division cycle 5-like protein
6ff4_L1e-13123313334Cell division cycle 5-like protein
6ff7_L1e-13123313334Cell division cycle 5-like protein
6icz_L1e-13123313334Cell division cycle 5-like protein
6id0_L1e-13123313334Cell division cycle 5-like protein
6id1_L1e-13123313334Cell division cycle 5-like protein
6qdv_O1e-13123313334Cell division cycle 5-like protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185202KRRELKAAGIDVTQRKRK
2198203QRKRKS
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021847508.10.0cell division cycle 5-like protein
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLA0A0K9REU60.0A0A0K9REU6_SPIOL; Uncharacterized protein
STRINGXP_010674469.10.0(Beta vulgaris)
STRINGXP_006398166.10.0(Eutrema salsugineum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.11e-172cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]