PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_078870_dnps.t1
Common NameSOVF_078870
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family NAC
Protein Properties Length: 511aa    MW: 57759.3 Da    PI: 4.4646
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_078870_dnps.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM48.62.6e-151663053126
                NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv...ePwdLpk.....kvkaeekewyfFskrdkkyat.gkrknra..tk..sg 81 
                         Gf+F+Pt+ +l+++yL +k+++++l++   + +++iy     +P++          ++e++  yfF+k ++ +++ g +++ +  t    g
  Sp_078870_dnps.t1 166 SGFHFKPTEFQLLNFYLLPKINDEPLPVIPRMLDANIYGDkgdHPSQVFDsfgqsDREEEDTVRYFFTKLQHVSKKnGVNSKNVirTVggYG 257
                        6************************999777999999975445999996334432222234455****998877641433333322442355 PP

                NAM  82 yWkatgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmhey 126
                         W++  + +++++k    ++ +vg k+tL+f +g+     + +W m e 
  Sp_078870_dnps.t1 258 HWNNART-ESIMVKnnqgEHVEVGSKTTLTFKRGKGIVDDHVEWSMIEI 305
                        6997766.45555435555555************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-17156320IPR003441NAC domain
PROSITE profilePS5100516.572164324IPR003441NAC domain
PfamPF023653.9E-11166305IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MWSMICREYD GNVIENDHQR SCRAWRETLF YDLLGDLQVY ETKEHMKHAL GCIMNAAISL  60
DGGIMHRKGR VSLGSMHADL HFRVVAEEQE YLSRDEMMKE IENKKLELNI VEEAIAYTNE  120
QRESSLNNFR EREAGFLKLI EDKEEINKLI LSQQTTPMAP LHTQSSGFHF KPTEFQLLNF  180
YLLPKINDEP LPVIPRMLDA NIYGDKGDHP SQVFDSFGQS DREEEDTVRY FFTKLQHVSK  240
KNGVNSKNVI RTVGGYGHWN NARTESIMVK NNQGEHVEVG SKTTLTFKRG KGIVDDHVEW  300
SMIEISTYDS NVVLCKITKK IPKQFSQKRQ LQTTSSSIIS TTTVDNDGVQ GNKRQCVSVQ  360
VYQPQEYGVS GVVQEQETNN TVNLGEEEHQ GMEDDDDMAL FCKGLEEDLS VGDDLNSDDN  420
IDGLLDLCST TPTTTSASTI VADDGVQGNK DQCVAVQVDQ PQECGVLGMV QEQETNNTVN  480
AEQVNFEDFS VGGNDFYLTL EDRILLNSLG F
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021843047.10.0uncharacterized protein LOC110783060
TrEMBLA0A0K9RDE80.0A0A0K9RDE8_SPIOL; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.21e-09NAC domain containing protein 47