PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_076370_jpht.t1
Common NameSOVF_076370
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C2H2
Protein Properties Length: 266aa    MW: 29543.8 Da    PI: 9.7495
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_076370_jpht.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.0003779101123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C++C+ +Fs++  L  H++ H
  Sp_076370_jpht.t1  79 FTCNYCKGRFSTSQALGGHQNAH 101
                        89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.01E-676106No hitNo description
Gene3DG3DSA:3.30.160.609.6E-477105IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.0E-578103IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.80379106IPR007087Zinc finger, C2H2
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MEIKSSSRSL ESSPGLFQSN PNKIKRDDNK NNKMKGTIVV DTPSSGNTML DLKLSSFSPK  60
SEANSELSDE EEKSSTRVFT CNYCKGRFST SQALGGHQNA HKQERARDKM RQATGFSSAY  120
NNVVTNNNLS YHPYLGMYNN IPYSGYCKRS PLGVVKTNSM IHKPGYQWSI HGFRHGYGGI  180
RRSNYDKLRM SNNNNANYAS FYNLNNLSRS LPALVGDGDS AQALSNTSIF PILESDNSGK  240
GDRHLAGEKL DQVKSEISCL DLSLRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021752028.15e-81zinc finger protein 4-like
TrEMBLA0A0K9RG560.0A0A0K9RG56_SPIOL; Uncharacterized protein
STRINGXP_010693745.11e-73(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.12e-14zinc-finger protein 1