PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Sp_076370_jpht.t1

Common Name

SOVF_076370

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

C2H2

Protein Properties

Length: 266aa MW: 29543.8 Da PI: 9.7495

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_076370_jpht.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.8	0.00037	79	101	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+ +Fs++ L H++ H Sp_076370_jpht.t1 79 FTCNYCKGRFSTSQALGGHQNAH 101 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	9.01E-6	76	106	No hit	No description
Gene3D	G3DSA:3.30.160.60	9.6E-4	77	105	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	2.0E-5	78	103	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.803	79	106	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	81	101	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MEIKSSSRSL ESSPGLFQSN PNKIKRDDNK NNKMKGTIVV DTPSSGNTML DLKLSSFSPK 60 SEANSELSDE EEKSSTRVFT CNYCKGRFST SQALGGHQNA HKQERARDKM RQATGFSSAY 120 NNVVTNNNLS YHPYLGMYNN IPYSGYCKRS PLGVVKTNSM IHKPGYQWSI HGFRHGYGGI 180 RRSNYDKLRM SNNNNANYAS FYNLNNLSRS LPALVGDGDS AQALSNTSIF PILESDNSGK 240 GDRHLAGEKL DQVKSEISCL DLSLRL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021752028.1	5e-81	zinc finger protein 4-like
TrEMBL	A0A0K9RG56	0.0	A0A0K9RG56_SPIOL; Uncharacterized protein
STRING	XP_010693745.1	1e-73	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80730.1	2e-14	zinc-finger protein 1