PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_076120_jsgg.t1
Common NameSOVF_076120
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 263aa    MW: 28596.6 Da    PI: 5.2259
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_076120_jsgg.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.41.7e-10145192455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  Sp_076120_jsgg.t1 145 SHSLAERARREKISERMRILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 192
                        8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.32E-10139196No hitNo description
SuperFamilySSF474591.31E-17139207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.726141191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.8E-18141209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.0E-8145192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-10147197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MDPQTTLMNE TPSFNLSEIW PIPMNGAAAA GLDLRRSPFG PSLARFVDPG PNLEVSGSDG  60
GGCGAARKRR ENVEDDDSGT GVCNGMSDAD GKRLKSTGSE DENQDQKGGN ETNSGKGPEQ  120
KSKPVSDPSK DYIHVRARRG QATDSHSLAE RARREKISER MRILQDLVPG CNKVIGKALV  180
LDEIINYIQS LQRQVEFLSM KLEAVNTRTS PGIEGFPSKD FGQQAFDTSG MGYGSQTARD  240
QYGRDTSPEW LHMQIGGGFD RQT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021849932.10.0transcription factor BHLH089
SwissprotQ69WS32e-71BH094_ORYSJ; Transcription factor BHLH094
TrEMBLA0A0K9RFZ00.0A0A0K9RFZ0_SPIOL; Uncharacterized protein
STRINGXP_010683313.11e-157(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.13e-91BIG PETAL P