PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_076120_jsgg.t1 | ||||||||
Common Name | SOVF_076120 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | bHLH | ||||||||
Protein Properties | Length: 263aa MW: 28596.6 Da PI: 5.2259 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.4 | 1.7e-10 | 145 | 192 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq Sp_076120_jsgg.t1 145 SHSLAERARREKISERMRILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 192 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.32E-10 | 139 | 196 | No hit | No description |
SuperFamily | SSF47459 | 1.31E-17 | 139 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.726 | 141 | 191 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.8E-18 | 141 | 209 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.0E-8 | 145 | 192 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.6E-10 | 147 | 197 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MDPQTTLMNE TPSFNLSEIW PIPMNGAAAA GLDLRRSPFG PSLARFVDPG PNLEVSGSDG 60 GGCGAARKRR ENVEDDDSGT GVCNGMSDAD GKRLKSTGSE DENQDQKGGN ETNSGKGPEQ 120 KSKPVSDPSK DYIHVRARRG QATDSHSLAE RARREKISER MRILQDLVPG CNKVIGKALV 180 LDEIINYIQS LQRQVEFLSM KLEAVNTRTS PGIEGFPSKD FGQQAFDTSG MGYGSQTARD 240 QYGRDTSPEW LHMQIGGGFD RQT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021849932.1 | 0.0 | transcription factor BHLH089 | ||||
Swissprot | Q69WS3 | 2e-71 | BH094_ORYSJ; Transcription factor BHLH094 | ||||
TrEMBL | A0A0K9RFZ0 | 0.0 | A0A0K9RFZ0_SPIOL; Uncharacterized protein | ||||
STRING | XP_010683313.1 | 1e-157 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59640.1 | 3e-91 | BIG PETAL P |