PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_075720_wnni.t1
Common NameSOVF_075720
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family G2-like
Protein Properties Length: 396aa    MW: 43980.6 Da    PI: 8.5347
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_075720_wnni.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1023.7e-32212265255
            G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Sp_075720_wnni.t1 212 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 265
                        9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.15E-15209265IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-28210265IPR009057Homeodomain-like
TIGRFAMsTIGR015579.5E-24212265IPR006447Myb domain, plants
PfamPF002496.9E-7213264IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010158Biological Processabaxial cell fate specification
GO:0010229Biological Processinflorescence development
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MELFPAQPDL SLQISPPNVP KPTSTISASS DNMDLAFWKR ASDNSLNTLS KPTSAFDLSL  60
SHPVPPSSAV TGTNPAFLHH YHHHHNNHHQ QQQQQQQQQQ QQQLYQQLLQ QHHINSTTCS  120
SGGGLGSELG FSRPIRGIPV YQNPPPSFPF APPGLPPPLD SSTGSPASNH HHHHHIPYQS  180
TPSSHHHHHH HQGLMRSRFL SRFPAKRSMR APRMRWTSTL HARFVHAVEL LGGHERATPK  240
SVLELMDVKD LTLAHVKSHL QMYRTVKTTD RAAASSGQGD VYENGSSGDT SDDMFGNVQS  300
TRSSERPTLP SPNMNQEKDY NSHGLWSNSS SREAWLHSKP KDSGGNTMQC QSSIEKELDP  360
KCLSYESSSI ISGDHHHQTS PTTTKPNLEF TLGRAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-16213267458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-16213267458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-16213267458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-16213267458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-16213267458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-16213267458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-16213267458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-16213267458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00174DAPTransfer from AT1G32240Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021852042.10.0probable transcription factor KAN2
SwissprotQ9C6161e-77KAN2_ARATH; Probable transcription factor KAN2
TrEMBLA0A0K9RFX70.0A0A0K9RFX7_SPIOL; Uncharacterized protein
STRINGXP_010677368.11e-173(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.12e-75G2-like family protein
Publications ? help Back to Top
  1. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]