PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_075640_kgnt.t1
Common NameSOVF_075640
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C3H
Protein Properties Length: 629aa    MW: 68768.4 Da    PI: 7.6881
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_075640_kgnt.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.45.1e-08244264526
                        --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                        +C+ f + G Ck G+ C FaHg
  Sp_075640_kgnt.t1 244 PCPEFKK-GSCKKGEECEFAHG 264
                        8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5029716.20222127IPR020683Ankyrin repeat-containing domain
CDDcd002043.53E-1425130No hitNo description
Gene3DG3DSA:1.25.40.201.6E-1727167IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484035.91E-1641139IPR020683Ankyrin repeat-containing domain
PfamPF127961.0E-753125IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.0575781IPR002110Ankyrin repeat
SMARTSM002480.00365787IPR002110Ankyrin repeat
PROSITE profilePS5008810.17992127IPR002110Ankyrin repeat
SMARTSM002482.192124IPR002110Ankyrin repeat
PROSITE profilePS5010312.981239266IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-4239265IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4243265IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-5244264IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.54274298IPR000571Zinc finger, CCCH-type
SuperFamilySSF819959.94E-7397452No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    Send to blast
MGMDIELVSN SASNSLEIAA SGDVTSFQLA VDSGKVSIDE VDLWYTRRIG SNQMAYEERT  60
PLMVAAQYGS TQIVDFILQS GGVDVNRVSG SDRVTALHCA VAGGSHSSGA VVQRLISASA  120
NINIIDANGN KASDLISMFS RVPSKNSNKQ LDILLKSGYS DSDSSSISGF SSDSETESKK  180
EFSVSELPDI NNGVYGSDDF RMYCFKIKPC SRAYTHDWTE CPFAHPGENA RRRDPKKYQY  240
TCVPCPEFKK GSCKKGEECE FAHGVFESWL HPAQYRTRLC KDEIGCARKV CFFAHKREEL  300
RPVYASTGSA IPDVSVSSPG GFSNASSTPP MSPSYAPLSP GNGASPGAGG MYQGKSSNFG  360
ASPPNLQLPG SRLRSSFSAR DVELERELIK LETQLMNQQH QQYQDYQQHQ QQQHQHQQQQ  420
QQQQQQHQQV LSPRPSPRWN NNNNNNMMPG SNLESAFASI NVSRKMSPPS VLDSPLRKLS  480
PPRGLDSPKS MAAAMLNSRA AAFVKRSQSF IDRSATMGAN MSSPMSDWGS PNGKLDWGIH  540
GEELNKLRKS NSFGFRGANN NNNATRTSPP GFNQPDVSWV NSLVKDEAGA GYLGARSPSY  600
GRNGAGNGVQ VQDMCLPWEQ LYIEEQLVA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021862748.10.0zinc finger CCCH domain-containing protein 47-like isoform X2
TrEMBLA0A0K9REK40.0A0A0K9REK4_SPIOL; Uncharacterized protein
STRINGXP_010689596.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.21e-127C3H family protein