PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_074830_kuwx.t1
Common NameSOVF_074830
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family CPP
Protein Properties Length: 571aa    MW: 61700.3 Da    PI: 7.837
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_074830_kuwx.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.31.8e-1496134241
                TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                        ++k+CnCk+s+Clk+YCeCfa+g++C+  C+C +C+N+ +
  Sp_074830_kuwx.t1  96 KQKQCNCKNSRCLKLYCECFASGTYCDG-CNCINCHNSMD 134
                        89**************************.********876 PP
2TCR51.61.9e-16180219140
                TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                        k++kgCnCkks ClkkYCeCf+a+  Cs++CkC dCkN e
  Sp_074830_kuwx.t1 180 KHNKGCNCKKSGCLKKYCECFQANILCSDNCKCIDCKNFE 219
                        589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011149.6E-1795135IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.396220IPR005172CRC domain
PfamPF036382.6E-1197132IPR005172CRC domain
SMARTSM011143.5E-20180221IPR033467Tesmin/TSO1-like CXC domain
PfamPF036383.8E-13183218IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MERGEMAAMT AATTSSLSEF APRKLARQLD FTPVLSAPVQ KSPAQQLSVH QLPVQAVQRA  60
VHPAPRPALA VTVKPEPPSS QPPATVADGK DGTPKKQKQC NCKNSRCLKL YCECFASGTY  120
CDGCNCINCH NSMDHEAARQ EAIVATLERN PNAFRPKIAN SPHGSRISKP ETGPAQLLGK  180
HNKGCNCKKS GCLKKYCECF QANILCSDNC KCIDCKNFEG SEERQALFHG NSYNSMVYQA  240
ANAAINGAIG SSGYGNLPGS RKRRSQDPFI GMYNNQPFYH NGHYMQQNHV KSTTSSLPSE  300
PASRTASSQA ASKITYRSPL AGVIQPQDVK ELCSLLVIVS KEAAQTFVDK NSNIDNQERD  360
EANTYGCIEI KEKVNDQKES QTEKGALQNE STDEQAVRVC TDNSGLDESD ALNGRPTSPG  420
TMALMCYEQE TVLMEEGSTG PTANSQNITP ERAETSSGQK ATSSFVEQER VVLTNFRDFL  480
NRLITCGSIK ETICSSLVKN EAGSQGPSLK TDALNDMPLS NGTVKPFVPI ANHASATTTG  540
GVAFSSVNAF AQHNRLPMEN GVLKPKIEKA V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-339722911132Protein lin-54 homolog
5fd3_B2e-339722911132Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1259264SRKRRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021835509.10.0protein tesmin/TSO1-like CXC 5
TrEMBLA0A0K9RGJ50.0A0A0K9RGJ5_SPIOL; Uncharacterized protein
STRINGXP_010668135.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-131Tesmin/TSO1-like CXC domain-containing protein