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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_073550_czdq.t1 | ||||||||
Common Name | SOVF_073550 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | Dof | ||||||||
Protein Properties | Length: 248aa MW: 27863 Da PI: 9.5721 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 87.6 | 1.1e-27 | 31 | 90 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +k+l+cprC+s +tk Cy nny+++q r+fC++C+ryW +GGa++ +P+ +gr k+k++s Sp_073550_czdq.t1 31 DKILSCPRCNSIETKSCYLNNYNVNQSRHFCRNCQRYWPTGGAIKKLPIRAGRCKSKHAS 90 7889*****************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-19 | 27 | 87 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.8E-21 | 32 | 88 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 22.853 | 34 | 88 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MSENLEITSS VQQRTDKSQE ATKVAVMTKF DKILSCPRCN SIETKSCYLN NYNVNQSRHF 60 CRNCQRYWPT GGAIKKLPIR AGRCKSKHAS SYLRPVTTSS HKEFLFPFIS PTIPEVCIQN 120 ITIPLVPSTC IKRLSATYND CSGNTSTCPS LRKHSRDLNL QQDERNDKGL CLPKTLRIVI 180 DPVAAAKSCI WSTLGIKPPG QRDPVPDGCM FRAFQFRPEA NAETSQVFKV LEANPVALSR 240 SQLFRETT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021860753.1 | 0.0 | cyclic dof factor 3-like | ||||
TrEMBL | A0A0K9RF85 | 0.0 | A0A0K9RF85_SPIOL; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39660.2 | 3e-26 | cycling DOF factor 2 |