PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_071590_rodk.t1
Common NameSOVF_071590
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 360aa    MW: 39641.4 Da    PI: 6.1912
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_071590_rodk.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.45.9e-09151197455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         h  +Er+RR+ + + f  L  ++P +     kK +K ++L +A++++k+Lq
  Sp_071590_rodk.t1 151 DHILAERKRRELLSQLFISLSAIVPGL-----KKIDKTSVLGEAIKHMKQLQ 197
                        6899***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.01E-13138206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.522147196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-12151206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.6E-7151197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.06E-9152201No hitNo description
SMARTSM003539.5E-10153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5167110.157277353IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MASTMTMEAW LAQLEMDQIP SFIDNNSYEQ YHQSETIEGS FDEQLAATLG EDFPYSLYAT  60
SDDSASPHGD FDCNLIEQYI STPLISNSSD NNNDNNINND GDNVVSSNVQ KSQPSKKKGA  120
AKKGAAKKEV AKKEAVSGGT KRKRQPSQVQ DHILAERKRR ELLSQLFISL SAIVPGLKKI  180
DKTSVLGEAI KHMKQLQEKV KVLEQVAAKR TVESVVVVKK SKVVVDNGSC DNGNVSSSTV  240
DDYCTSASSG RSGNGGGDDN VSSFPEIEVK ISGNTMLLRV YCEQQKGILA KLFAEVDKHD  300
LRITNSSVIP FENLALDITI VAQMERGFNK KVKDFVRVLR NALRLANYQR HESSEDEHSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141159RKRQPSQVQDHILAERKRR
2155160ERKRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021865815.10.0transcription factor bHLH18-like
TrEMBLA0A0K9RHN80.0A0A0K9RHN8_SPIOL; Uncharacterized protein
STRINGXP_010683069.11e-136(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-43bHLH family protein