PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_071320_ekpp.t1 | ||||||||
Common Name | SOVF_071320 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | Dof | ||||||||
Protein Properties | Length: 347aa MW: 37888.1 Da PI: 7.1229 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 121.7 | 2.5e-38 | 92 | 151 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvPvG+grr+nk+ Sp_071320_ekpp.t1 92 PDKILPCPRCNSSDTKFCYFNNYNVNQPRHFCKSCQRYWTAGGTVRNVPVGAGRRRNKHL 151 68999*****************************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-28 | 85 | 149 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 9.9E-32 | 94 | 150 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.723 | 96 | 150 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 98 | 134 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MAATAVKDPA IKLFGRTICL PESQFSDDSE ILDNRSSLIA KEETEECRNE NTVIPDQAVS 60 TKRAITAQTT MKPKDQQEDS DSAGEQKQMR RPDKILPCPR CNSSDTKFCY FNNYNVNQPR 120 HFCKSCQRYW TAGGTVRNVP VGAGRRRNKH LASQYRQVIA SSDGGETMVA EVTDSENQLR 180 SCEESSSSCT GSSSKEMVLK FGPESPHCDN STPNLLSNRQ SNECSEIRGV NGDFPQLYHY 240 VVPPQVTGSS PHSNGSVSLA VPGYASPNVS YQIVPAAYMN CIPVWVAGSG NLSLAMSNGC 300 VSPSLYSSGS RLQVLGKHSR DINQAHERRT EEGAAPKTIK IHGLDEA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021853132.1 | 0.0 | cyclic dof factor 2-like | ||||
TrEMBL | A0A0K9RHF4 | 0.0 | A0A0K9RHF4_SPIOL; Uncharacterized protein | ||||
STRING | XP_010695534.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39660.2 | 2e-42 | cycling DOF factor 2 |