PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_071320_ekpp.t1

Common Name

SOVF_071320

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

Dof

Protein Properties

Length: 347aa MW: 37888.1 Da PI: 7.1229

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_071320_ekpp.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.7	2.5e-38	92	151	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvPvG+grr+nk+ Sp_071320_ekpp.t1 92 PDKILPCPRCNSSDTKFCYFNNYNVNQPRHFCKSCQRYWTAGGTVRNVPVGAGRRRNKHL 151 68999*****************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-28	85	149	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	9.9E-32	94	150	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.723	96	150	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	98	134	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MAATAVKDPA IKLFGRTICL PESQFSDDSE ILDNRSSLIA KEETEECRNE NTVIPDQAVS 60 TKRAITAQTT MKPKDQQEDS DSAGEQKQMR RPDKILPCPR CNSSDTKFCY FNNYNVNQPR 120 HFCKSCQRYW TAGGTVRNVP VGAGRRRNKH LASQYRQVIA SSDGGETMVA EVTDSENQLR 180 SCEESSSSCT GSSSKEMVLK FGPESPHCDN STPNLLSNRQ SNECSEIRGV NGDFPQLYHY 240 VVPPQVTGSS PHSNGSVSLA VPGYASPNVS YQIVPAAYMN CIPVWVAGSG NLSLAMSNGC 300 VSPSLYSSGS RLQVLGKHSR DINQAHERRT EEGAAPKTIK IHGLDEA

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MAATAVKDPA IKLFGRTICL PESQFSDDSE ILDNRSSLIA KEETEECRNE NTVIPDQAVS  60
TKRAITAQTT MKPKDQQEDS DSAGEQKQMR RPDKILPCPR CNSSDTKFCY FNNYNVNQPR  120
HFCKSCQRYW TAGGTVRNVP VGAGRRRNKH LASQYRQVIA SSDGGETMVA EVTDSENQLR  180
SCEESSSSCT GSSSKEMVLK FGPESPHCDN STPNLLSNRQ SNECSEIRGV NGDFPQLYHY  240
VVPPQVTGSS PHSNGSVSLA VPGYASPNVS YQIVPAAYMN CIPVWVAGSG NLSLAMSNGC  300
VSPSLYSSGS RLQVLGKHSR DINQAHERRT EEGAAPKTIK IHGLDEA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021853132.1	0.0	cyclic dof factor 2-like
TrEMBL	A0A0K9RHF4	0.0	A0A0K9RHF4_SPIOL; Uncharacterized protein
STRING	XP_010695534.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	2e-42	cycling DOF factor 2