PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_070650_qxaa.t1
Common NameSOVF_070650
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB
Protein Properties Length: 345aa    MW: 39045.8 Da    PI: 7.4269
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_070650_qxaa.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.35.6e-161461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g W++eEde+l + ++++G g+W+++++  g+ R++k+c++rw +yl
  Sp_070650_qxaa.t1 14 KGLWSPEEDEKLFNHITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                       678*******************************************97 PP
2Myb_DNA-binding50.93.6e-1667110146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        rg +++eE++l+v +++ lG++ W+ Ia+ ++ gRt++++k++w++
  Sp_070650_qxaa.t1  67 RGVFSKEEEDLIVSLHQILGNR-WAQIASQLP-GRTDNEIKNFWNS 110
                        899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-24663IPR009057Homeodomain-like
PROSITE profilePS5129418.218961IPR017930Myb domain
SuperFamilySSF466894.77E-2911108IPR009057Homeodomain-like
SMARTSM007174.3E-121363IPR001005SANT/Myb domain
PfamPF002491.1E-131461IPR001005SANT/Myb domain
CDDcd001674.21E-101761No hitNo description
PROSITE profilePS5129425.14362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-2564116IPR009057Homeodomain-like
SMARTSM007179.5E-1666114IPR001005SANT/Myb domain
PfamPF002491.0E-1467111IPR001005SANT/Myb domain
CDDcd001671.75E-1070109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MVRHSCCTKP KLKKGLWSPE EDEKLFNHIT RFGVGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGVF SKEEEDLIVS LHQILGNRWA QIASQLPGRT DNEIKNFWNS CLKKKLMKQG  120
INPQTHEPLL TKLQPNNNIN IICNNGFKTA AETQNVLRAV KMEQPPFPLS NTAELTTNTS  180
SFSSSLSSHQ FSLIQPVFTG LSSSQSYLSL LKPMMESSQS QLQSQQYFLQ QSCFTDNNFE  240
SQNLGSDSVI FSEGKECSSS SSNNTSNNNM MVNSNNNNGR FSWESCSTDH HQQQNKFDQS  300
EIFQFPVNFG GMIKMEADQT SPWEEDQDLV TAAAGNLDYF LQHIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-301011623128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021853056.10.0transcription factor MYB86-like
SwissprotQ8LPH64e-76MYB86_ARATH; Transcription factor MYB86
TrEMBLA0A0K9RHI80.0A0A0K9RHI8_SPIOL; Uncharacterized protein
STRINGXP_010678849.11e-125(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.19e-77myb domain protein 86