PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_070530_eiqd.t1
Common NameSOVF_070530
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family Trihelix
Protein Properties Length: 365aa    MW: 40992.4 Da    PI: 9.294
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_070530_eiqd.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix45.52e-1413113283
           trihelix   2 WtkqevlaLiearremeerlr..rgk....................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 
                        Wt +e++ Liea+++++er +  r+k                      + +W++v ++++ +g+ rs++qC++kw+nl ++ykk+++ +k+ 
  Sp_070530_eiqd.t1  13 WTMEETMILIEAKKKDDERRKlhRSKqsitsistsisssssssskpITELRWKWVEEYCWGKGCFRSQNQCNDKWDNLMRDYKKVRDYQKNL 104
                        **************999988843333678888888889999988878899***************************************997 PP

           trihelix  72 tsessstcpyfd 83 
                         +++ ++   + 
  Sp_070530_eiqd.t1 105 PADHLKS---YW 113
                        4444433...33 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.12591IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.5E-6631IPR009057Homeodomain-like
PfamPF138378.8E-1112118No hitNo description
Gene3DG3DSA:1.10.10.604.5E-66393IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MKMAMREYRK GNWTMEETMI LIEAKKKDDE RRKLHRSKQS ITSISTSISS SSSSSSKPIT  60
ELRWKWVEEY CWGKGCFRSQ NQCNDKWDNL MRDYKKVRDY QKNLPADHLK SYWNMDKLER  120
KDKGLPTNML PQIYQALFDV VESTSSTPTT TPTPTPTSTP TPTPTSTTGG HFLLPISMME  180
MQQTPPPSVV VPALQLSSPP PLPPSPLLPP PLLLPPPPPS STFLSPQHLP PHPSPTLESE  240
RREYPHDPES SPAKRRRKEE GIAATTAAAE AAAAAATTTT TTLEEVSSAI SRSAVMISEA  300
IQASEGREER RHREMMNIQQ SRLRVEESNL EMNRQGFNGL NEAINRLATS IFTWANSHKN  360
QQGPS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021857584.10.0protein enabled homolog
TrEMBLA0A0K9RG590.0A0A0K9RG59_SPIOL; Uncharacterized protein
STRINGXP_010687202.11e-130(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.13e-48Trihelix family protein