PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_069780_ywkn.t1

Common Name

SOVF_069780

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

bHLH

Protein Properties

Length: 263aa MW: 29492.9 Da PI: 6.68

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_069780_ywkn.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.7	2.1e-13	62	113	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P + + ++ + a+i+ A++++k+L+ Sp_069780_ywkn.t1 62 QRMTHIAVERNRRKQMNEYLNVLRSLMPDS---YVQRGDQASIVGAAINFVKELE 113 79**************************...9****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.18E-12	60	117	No hit	No description
PROSITE profile	PS50888	15.294	61	112	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.49E-16	61	128	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.0E-10	62	113	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-13	62	125	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.6E-10	67	118	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
YDHECWGLVN SSSPDQDRNA AAAEVEAEEN GCGYDYDGGP MVRPKQRRRA RAKKNQEEIE 60 NQRMTHIAVE RNRRKQMNEY LNVLRSLMPD SYVQRGDQAS IVGAAINFVK ELEHNLQSLS 120 AKKQMKENGT DTDSSSSSSS SIMPFGEFFT FPQFSSSNKG TSQEPHHDHA SVEGGADVQV 180 TMVECHAHLK IRLRRPPKQL SKLISGFNSL RLSVLHLNVN TAHDGVVLYT FSLKVEAESK 240 LNSVDDIARE VYLLLGRIQE EAS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	62	73	RMTHIAVERNRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021840792.1	0.0	transcription factor bHLH94-like
Swissprot	Q9C7T4	3e-73	BH096_ARATH; Transcription factor bHLH96
TrEMBL	A0A0K9RGC7	0.0	A0A0K9RGC7_SPIOL; Uncharacterized protein (Fragment)
STRING	XP_010694628.1	1e-116	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	4e-72	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]