PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_069720_rxjt.t1 | ||||||||
Common Name | SOVF_069720 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | bHLH | ||||||||
Protein Properties | Length: 248aa MW: 26520.7 Da PI: 7.9455 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.7 | 2.7e-05 | 131 | 170 | 10 | 54 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + RR+++ +++ L++l+ + +K + +++L +A+ YI+ L Sp_069720_rxjt.t1 131 QGRRENLGERITVLQQLVSPY-----GKTDTSSVLHEAMGYIRFL 170 78*****************99.....9****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.388 | 121 | 170 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0048 | 127 | 176 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.89E-11 | 131 | 183 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.1E-7 | 131 | 179 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.26E-4 | 133 | 175 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MGENGGIGGG IDLPGGSFSR LLLSSDDVEE KCFSVDSSVF PTPLFSSNTP NMLCFGDFIS 60 KNTPLFTLTG GNITNLTTST THSNKRRNEP GKEFGHGDGN GQNQKNGVKK NKSEMGPIVT 120 SSPGHAKNKK QGRRENLGER ITVLQQLVSP YGKTDTSSVL HEAMGYIRFL HDQVKVLSTP 180 YLNSKCSPSS SSPHHTITVK GELVEDSHST EGLRSRGLCL VPLECILHVA STNGADFWSS 240 ATVTSPAP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021838648.1 | 0.0 | transcription factor bHLH113-like | ||||
TrEMBL | A0A0K9RGE7 | 0.0 | A0A0K9RGE7_SPIOL; Uncharacterized protein | ||||
STRING | XP_010691655.1 | 1e-97 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19500.1 | 4e-36 | bHLH family protein |