PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_068890_kijg.t1
Common NameSOVF_068890
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bZIP
Protein Properties Length: 362aa    MW: 41235.8 Da    PI: 6.6399
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_068890_kijg.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.22.8e-1179112538
                        CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeL 38 
                        k++rr+++NReAAr+sR+RKka+i++Le    +L
  Sp_068890_kijg.t1  79 KVQRRLAQNREAARKSRLRKKAYIQQLELSRSKL 112
                        89*************************9544444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1709.6E-873121No hitNo description
SMARTSM003384.6E-675135IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.09477121IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.04E-679121No hitNo description
PfamPF001705.9E-879113IPR004827Basic-leucine zipper domain
PROSITE patternPS0003608297IPR004827Basic-leucine zipper domain
PfamPF141448.0E-30163237IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MNSPTAQFVV SRRMNLYEPL HQISSWVDSF RDDGFPNVSP STVVEVNERL DSLSEDTSSH  60
GGQAPSNRYD QEASKPVEKV QRRLAQNREA ARKSRLRKKA YIQQLELSRS KLMQMEQELE  120
RVRQQGMYVG GGIDPVPFSA TVNSGIVAFE MEYGHWVEEQ NKQICELRNA LNTHITDVEL  180
RILVDGGMKH YFDLFQLKAG AAKADVFYLM SGMWKTSAER FFLWIGGFRP SELLKVLGPQ  240
LDPLTDQQVM DVYNLKQSCE QAEEALSQGM DKLQQTLAET VGTDRLGEGI YTSEMANNAI  300
EKLEALVSFV NQADHLRRET LQQMHRILTV RQAARGLLAL GEYFQRLRAL SSLWCSRPRQ  360
PT
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00502DAPTransfer from AT5G10030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021846364.10.0transcription factor TGA4-like isoform X1
RefseqXP_021846365.10.0transcription factor TGA4-like isoform X1
SwissprotQ391621e-179TGA4_ARATH; Transcription factor TGA4
TrEMBLA0A0K9RI730.0A0A0K9RI73_SPIOL; Uncharacterized protein
STRINGXP_010680601.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10030.20.0TGACG motif-binding factor 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Canales J,Contreras-López O,Álvarez JM,Gutiérrez RA
    Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana.
    Plant J., 2017. 92(2): p. 305-316
    [PMID:28771873]