PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_068120_ctqx.t1

Common Name

SOVF_068120

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

bHLH

Protein Properties

Length: 224aa MW: 24365.1 Da PI: 10.2181

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_068120_ctqx.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43	8.2e-14	53	100	2	54
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++h+e+ErrRR+riN f++Lr++lP++ K +Ka++L ++v+ +k+L Sp_068120_ctqx.t1 53 CKSHKEAERRRRKRINGHFATLRSVLPNL-----VKTDKATVLAEVVRRVKEL 100 789***********************9.....7**********999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.275	51	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.9E-11	53	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.93E-5	54	103	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.4E-13	55	109	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.62E-13	55	109	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.7E-12	57	106	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:3.30.70.260	9.2E-7	134	189	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MLVNTMANIY EMGTSSNNIH EENGSIIANA ATKYVVCSSK VGISPEAKAL AACKSHKEAE 60 RRRRKRINGH FATLRSVLPN LVKTDKATVL AEVVRRVKEL KKATSELTEA DYDACLLPGD 120 IDKVSLRRNE NDNTTLIATL CSEDRPDLIV DMTRALRSVK GKVVKAEMAT VGGRTKNVLW 180 VRGVGGGVPE GLLKRALEVV VDKPVSSSSS FSGLGHGLRI HRPY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021841028.1	1e-163	transcription factor bHLH30-like
Swissprot	Q9S7Y1	8e-35	BH030_ARATH; Transcription factor bHLH30
TrEMBL	A0A0K9RIG1	1e-161	A0A0K9RIG1_SPIOL; Uncharacterized protein
STRING	XP_010680330.1	8e-96	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	1e-36	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]