PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_067200_ccqz.t1 | ||||||||
Common Name | SOVF_067200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | bHLH | ||||||||
Protein Properties | Length: 237aa MW: 26742.2 Da PI: 5.4532 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.5 | 7.5e-06 | 38 | 86 | 2 | 54 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ + erEr R+++N+ fe+L ++l + ++ Ka++L ++++ +k+L Sp_067200_ccqz.t1 38 KVLKAERERLKREQLNELFEKLASVLELN----QENSGKASVLNETIKLMKDL 86 667889********************997....45566888999999999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 9.64E-6 | 34 | 98 | No hit | No description |
SuperFamily | SSF47459 | 6.54E-11 | 36 | 103 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.208 | 36 | 86 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-5 | 39 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.004 | 42 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010106 | Biological Process | cellular response to iron ion starvation | ||||
GO:0055072 | Biological Process | iron ion homeostasis | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MGSDVLDDPV VNEESDVPED VLDDSHSNKR KRGKVPKKVL KAERERLKRE QLNELFEKLA 60 SVLELNQENS GKASVLNETI KLMKDLVSHI KSLRKENETL LSESQYMTAE KKELKEETTA 120 LEVQIRKMQN EMEERLGQSK PDLNVSPSLD CWHAETPSHL PPMATNTDRS SQQPPILGPL 180 YVIPINPDLQ AFQKVDTVSN PTITVSKPHA RYPTPADSWP SQLLLSKQAE ATIRQSS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021865161.1 | 1e-172 | transcription factor bHLH47 | ||||
Swissprot | Q9SN74 | 1e-51 | BH047_ARATH; Transcription factor bHLH47 | ||||
TrEMBL | A0A0K9RH89 | 1e-171 | A0A0K9RH89_SPIOL; Uncharacterized protein | ||||
STRING | XP_010685315.1 | 1e-115 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47640.3 | 2e-44 | bHLH family protein |