PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_067160_qeie.t1
Common NameSOVF_067160
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family AP2
Protein Properties Length: 545aa    MW: 60349.7 Da    PI: 6.855
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_067160_qeie.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.83.6e-15237296155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV+ ++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Sp_067160_qeie.t1 237 SQYRGVTKHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 296
                        78*******************655454478446*************************98 PP
2AP246.58.8e-15341390355
                AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Sp_067160_qeie.t1 341 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 390
                        9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.87E-22237306No hitNo description
PfamPF008471.5E-11237296IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-16237305IPR016177DNA-binding domain
SMARTSM003801.3E-29238310IPR001471AP2/ERF domain
PROSITE profilePS5103218.979238304IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-15238304IPR001471AP2/ERF domain
PRINTSPR003671.0E-6239250IPR001471AP2/ERF domain
CDDcd000186.46E-25339400No hitNo description
SuperFamilySSF541719.15E-18339400IPR016177DNA-binding domain
SMARTSM003803.9E-34340404IPR001471AP2/ERF domain
PROSITE profilePS5103219.137340398IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-18340399IPR001471AP2/ERF domain
PfamPF008471.7E-9341390IPR001471AP2/ERF domain
PRINTSPR003671.0E-6380400IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MSNWLGFSLI PHPQLHHITD DVHNSQQLEE VNSTPSSSPP RHNNATSFMP LRSDDGSFFT  60
TALSNGFHNL PFSAPNPQLE EWKYGNEEQH PKLEDFMGCC YSTSQDQENK MVINVNALPQ  120
DQFSSNQLQI QTCPYQDGGG GGENGGVILN GGCSQSLQCH QYSSSPFDGA AISQFKSWLR  180
QTPPNMGGSD GGGQLQSLSL AVNPVADSKK RGHSKSLNGG GELVPRKSLD TFGHRTSQYR  240
GVTKHRWTGR YEAHLWDNSC RKEGQTRKGR QVYLGGYDKE EKAARAYDLA ALKYWGPTTH  300
INFPITDYEK ELEDMKNMNR QEFVAHLRRQ SSGFSRGASM YRGVTRHHQH GRWQARIGRV  360
AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG TSAVTNFDMS RYDVKRIGSS STLIGGDLAK  420
RPSPNKELTP PPPPPPPPPP PPPALEDHNA CSEPQPLAII NGSDNASNNL PSIMWNNQGN  480
DQSEAQDNTM SLVLPSRNID GSNSYLPLHG QKYEECTISN DGDRLSKHNL GIVPQQVPMF  540
ALWNE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021865130.10.0AP2-like ethylene-responsive transcription factor BBM
TrEMBLA0A0K9RH530.0A0A0K9RH53_SPIOL; Uncharacterized protein
STRINGXP_010685318.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-120AP2 family protein