PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_066780_khjy.t1 | ||||||||
Common Name | SOVF_066780 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | WRKY | ||||||||
Protein Properties | Length: 364aa MW: 40668.2 Da PI: 6.18 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 89.1 | 3.6e-28 | 137 | 197 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK++ g+++prsYYrCt++ gC+++k+v+r++edp +++itY+g+H+++ Sp_066780_khjy.t1 137 EDGHSWRKYGQKDILGAKHPRSYYRCTYRniqGCSATKQVQRNDEDPMLFDITYRGSHTCT 197 7***************************98999**************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.4E-28 | 128 | 197 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.999 | 131 | 199 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.98E-25 | 135 | 198 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.6E-39 | 136 | 198 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.0E-27 | 137 | 196 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MEKGCGSYEQ ESLVMELIQG IALAKQLKAQ MSQEVLLAGD TKGMLAERIH SCLEKALLIM 60 KWGGSMSMEQ SNQSVVPSTT MPESPLSVIG SPRSEDFNPG FHVQQDGRNM SRKRKMMPIW 120 TDQAKASSEN AGEGAPEDGH SWRKYGQKDI LGAKHPRSYY RCTYRNIQGC SATKQVQRND 180 EDPMLFDITY RGSHTCTLAP RSKSAPTSPQ KQDRNKQNNF AITQYQQQPD MLLNFQTGLR 240 VDTQNLENQE TGFFFPTQEF GHENHAFTPS TLNHSHPSNS FPQSFIQSPA TSESTYFSTS 300 PCKTSTFGGF NYGQHFESDI TDIISATTSG TNSPIIGIDY PLEQWEGFLC DNQAFPTSFS 360 QAKE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 5e-19 | 137 | 196 | 9 | 68 | OsWRKY45 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 110 | 115 | SRKRKM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021846686.1 | 0.0 | probable WRKY transcription factor 53 | ||||
TrEMBL | A0A0K9RJ40 | 0.0 | A0A0K9RJ40_SPIOL; Uncharacterized protein | ||||
STRING | XP_010676319.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11070.1 | 1e-54 | WRKY family protein |