PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_066780_khjy.t1
Common NameSOVF_066780
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family WRKY
Protein Properties Length: 364aa    MW: 40668.2 Da    PI: 6.18
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_066780_khjy.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.13.6e-28137197259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                        +Dg++WrKYGqK++ g+++prsYYrCt++   gC+++k+v+r++edp +++itY+g+H+++
  Sp_066780_khjy.t1 137 EDGHSWRKYGQKDILGAKHPRSYYRCTYRniqGCSATKQVQRNDEDPMLFDITYRGSHTCT 197
                        7***************************98999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.4E-28128197IPR003657WRKY domain
PROSITE profilePS5081121.999131199IPR003657WRKY domain
SuperFamilySSF1182907.98E-25135198IPR003657WRKY domain
SMARTSM007742.6E-39136198IPR003657WRKY domain
PfamPF031066.0E-27137196IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MEKGCGSYEQ ESLVMELIQG IALAKQLKAQ MSQEVLLAGD TKGMLAERIH SCLEKALLIM  60
KWGGSMSMEQ SNQSVVPSTT MPESPLSVIG SPRSEDFNPG FHVQQDGRNM SRKRKMMPIW  120
TDQAKASSEN AGEGAPEDGH SWRKYGQKDI LGAKHPRSYY RCTYRNIQGC SATKQVQRND  180
EDPMLFDITY RGSHTCTLAP RSKSAPTSPQ KQDRNKQNNF AITQYQQQPD MLLNFQTGLR  240
VDTQNLENQE TGFFFPTQEF GHENHAFTPS TLNHSHPSNS FPQSFIQSPA TSESTYFSTS  300
PCKTSTFGGF NYGQHFESDI TDIISATTSG TNSPIIGIDY PLEQWEGFLC DNQAFPTSFS  360
QAKE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-19137196968OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110115SRKRKM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021846686.10.0probable WRKY transcription factor 53
TrEMBLA0A0K9RJ400.0A0A0K9RJ40_SPIOL; Uncharacterized protein
STRINGXP_010676319.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.11e-54WRKY family protein