PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sp_066050_dgqe.t1 | ||||||||
Common Name | SOVF_066050 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
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Family | MYB | ||||||||
Protein Properties | Length: 244aa MW: 28010.3 Da PI: 6.6105 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26 | 2.2e-08 | 5 | 55 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 r WT + + + av+ + + W +Ia++++ +t +++k+++q + Sp_066050_dgqe.t1 5 RSTWTWQQNKAFEVAVAIYSEDhseeKWGKIASEIPGYKTIEEIKHHYQLL 55 789*********************************899*********965 PP | |||||||
2 | Myb_DNA-binding | 42.8 | 1.2e-13 | 94 | 139 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++W++ E+++++ + +++G+g+Wk+I+ ++ +R++ q+ s+ qky Sp_066050_dgqe.t1 94 QPWSENEHKQFLLGLHKYGKGDWKSISMEFVRTRSASQVASHAQKY 139 79*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 5.796 | 1 | 56 | IPR017877 | Myb-like domain |
SMART | SM00717 | 2.2E-4 | 4 | 58 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.0E-6 | 5 | 54 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 8.22E-7 | 6 | 63 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.41E-4 | 7 | 56 | No hit | No description |
PROSITE profile | PS51294 | 15.332 | 88 | 144 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.08E-13 | 91 | 144 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.1E-11 | 92 | 142 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.5E-10 | 92 | 141 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.9E-14 | 93 | 143 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.6E-12 | 94 | 139 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.16E-8 | 95 | 140 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MANSRSTWTW QQNKAFEVAV AIYSEDHSEE KWGKIASEIP GYKTIEEIKH HYQLLVGDVE 60 AIESGLVPLP PYTAATTAPH FADHKFMWEF RKGQPWSENE HKQFLLGLHK YGKGDWKSIS 120 MEFVRTRSAS QVASHAQKYF KRQTDKKKKK KDRKRWSIFD ITAPVDQGGS QNRGSSSLSS 180 KNDDHTRKGK ETEPAVINEV TFEEKDPMIA PAEYVLPQDS WSFEDDPSID FYAIDECLSQ 240 LPPL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-13 | 1 | 72 | 1 | 73 | RADIALIS |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 145 | 153 | KKKKKKDRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021847077.1 | 0.0 | transcription factor SRM1-like | ||||
Swissprot | Q9FNN6 | 5e-42 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | A0A0K9RJ37 | 0.0 | A0A0K9RJ37_SPIOL; Uncharacterized protein | ||||
STRING | XP_010666611.1 | 7e-84 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 1e-37 | MYB family protein |
Publications ? help Back to Top | |||
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