PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_065630_mptu.t2
Common NameSOVF_065630
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family NF-YA
Protein Properties Length: 296aa    MW: 32215.4 Da    PI: 6.6295
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_065630_mptu.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.86.4e-32169225158
          CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                        +ep+YVNaKQy++Il+RRq Rak+e e+kl +k rkpylheSRh+hAlrR+Rg+gGrF
  Sp_065630_mptu.t2 169 QEPVYVNAKQYHGILRRRQVRAKAELERKL-IKIRKPYLHESRHQHALRRARGTGGRF 225
                        69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005215.4E-35167228IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.071168228IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.7E-26170225IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.8E-24171193IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860173193IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.8E-24202225IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MPSKSILASQ SEPSSHTTTT PTAVCSDPWW HAAAYAPLPL TDAVGNVPKP TLNQQLEMSG  60
SKDDQSLSNA GDDEEEESSK DSETTDGSSG HELQKSQYGE SSMSLGSADY YSQHPQLELV  120
GHSIACASTP YPDLYYGGMM AAYGPPPMVP PQFYGMHQPR MPLPLEMAQE PVYVNAKQYH  180
GILRRRQVRA KAELERKLIK IRKPYLHESR HQHALRRARG TGGRFAKKGE AEGSNHSADE  240
KNKSSDAGGS HSHEAREERG DINSSGGTRT GEGQSNQQQW GSGMSKDQAP HCALAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-18169225258NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021862521.10.0nuclear transcription factor Y subunit A-1-like isoform X2
SwissprotQ945M91e-54NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBLA0A0K9RJ930.0A0A0K9RJ93_SPIOL; Uncharacterized protein
STRINGXP_010673645.11e-176(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.13e-56nuclear factor Y, subunit A9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]