PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_064860_rhru.t1
Common NameSOVF_064860
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family Dof
Protein Properties Length: 219aa    MW: 23339.7 Da    PI: 8.2811
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_064860_rhru.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.86.3e-402180261
             zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                       ++++lkcprCds+ntkfCyynny+lsqPr+fCk+C+ryWtkGG+lrn+PvGgg+rkn k+
  Sp_064860_rhru.t1 21 EQEQLKCPRCDSANTKFCYYNNYNLSQPRHFCKSCKRYWTKGGSLRNIPVGGGSRKNTKR 80
                       57899****************************************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-271573IPR003851Zinc finger, Dof-type
PfamPF027011.9E-332379IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.1062579IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102763IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MQDPATTTAV FQQLNTPQFP EQEQLKCPRC DSANTKFCYY NNYNLSQPRH FCKSCKRYWT  60
KGGSLRNIPV GGGSRKNTKR ISSKRSSSCS SAAAQTLSPS SGLISEHKPV STVGQEIETG  120
FRFPDPAGGG GAGGSFTSML GLASEGQFGS LFLESSGPNG LRLGQDDDSS RNPGLELLHG  180
SGGSASEGLF MSDQSCNWGT TNGHGWSDLT IYTPGSKFQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00199DAPTransfer from AT1G51700Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021858885.11e-161dof zinc finger protein DOF1.7
SwissprotO821554e-46DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBLA0A0K9RHW01e-159A0A0K9RHW0_SPIOL; Uncharacterized protein
STRINGXP_010690053.11e-79(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51700.11e-40DOF zinc finger protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]