PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Sp_064430_njoe.t1

Common Name

SOVF_064430

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

C2H2

Protein Properties

Length: 259aa MW: 28862.6 Da PI: 8.5442

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_064430_njoe.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00022	75	97	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C k F ++ L H++ H Sp_064430_njoe.t1 75 FECQYCYKEFANSQALGGHQNAH 97 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.48E-6	73	102	No hit	No description
Gene3D	G3DSA:3.30.160.60	6.8E-5	73	101	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	7.5E-6	75	99	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.51	75	102	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	77	97	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MKLFGFEVDL DLYKNPENII NEQEESTNSS NTVSSGSKKE KVDNERSSSV NNNNNNNNNN 60 NNNNFIEVDV VGKKFECQYC YKEFANSQAL GGHQNAHKKE RMKKKRLQLQ ARKASINFYL 120 QPYQQQQYSK NNNNISGYYS SGSSSGGGGG GGVGGGALWY FDPSYNNYYA PTENNYEESQ 180 ISFGPFDHHR RNPTTTTGFE QFTVTHGGGR CISESSPTTS VVVKPYPLPV TKQIGCKSLD 240 LQLGLSLDSN HVVFKSTPR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021842787.1	1e-136	zinc finger protein 8
TrEMBL	A0A0K9RJX1	0.0	A0A0K9RJX1_SPIOL; Uncharacterized protein
STRING	XP_010682396.1	2e-68	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10480.1	1e-13	zinc finger protein 5