PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_063520_oicx.t1
Common NameSOVF_063520
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family G2-like
Protein Properties Length: 679aa    MW: 75161.5 Da    PI: 6.1629
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_063520_oicx.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like591e-1855104555
            G2-like   5 rWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        +Wtpe+ ++F++av +L G+++AtP  il+lm+vkgLt+e v SHL  YRl
  Sp_063520_oicx.t1  55 HWTPEINDAFIRAVLSL-GHQNATPNGILQLMNVKGLTMESVTSHLLSYRL 104
                        7****************.9*******************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.68E-1150108IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-1750108IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-1352104IPR006447Myb domain, plants
Gene3DG3DSA:3.80.10.101.5E-16431646IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520582.55E-18431645IPR032675Leucine-rich repeat domain, L domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    Send to blast
MDASIAGASP EKGKSDIPED SVSKSGSSTL ISMSAASPAT KHELAELSEN KTAKHWTPEI  60
NDAFIRAVLS LGHQNATPNG ILQLMNVKGL TMESVTSHLL SYRLSLQKTQ DFAFQEPGSG  120
DGTSSAHQLF DEIPQGLAGG GISAAHQVFD DMHLKTSNEG SAGGGISGAY QPFDEIPPHS  180
AGVGASGTHL VFGEFCNGKL LGEKMKSGTS LNNILQNESP KDAVSESLAT FVEKRKTKKS  240
PIHHHHHMKS LLNASAVFAP TYNYLPIPIY YPTLSAIDHR PFKSITHGLT PYHSIAKDVK  300
YPGSMTYIPI DPYSHLQPSL PFDRMSINDP LHFDTMIVND ALLYCALFPP GDEFEKDTLV  360
QLWMADGIFV EEPMERIAGL FFEDCLTKNY FQLSRTNLVT GKAMYKFIRD SRLDTLLISR  420
DKRSFCISRL ENVLTTGEAE EACLSNKSEL TKLELHWSDS QDEDVVGNDN IISSLQPNTS  480
LEELRISCYG GFELPHWICN PAYSKLVSIT LFKCENCLVL SSLGQLPSLK SLNIADFRKL  540
KVIDQKFYRG AGIPGCIAFP KLERLTVENM FSFEEWSGLG RFNFPHLLKL TIKHCPKLQR  600
LRALSSLSSL EHLEISGCEM LSSFPNGKLP DGLETFIVED CPFISAMALN DGGQDWYKVA  660
HIPHVWIDHQ EMSKNLREI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021837760.10.0putative disease resistance RPP13-like protein 1
TrEMBLA0A0K9RK600.0A0A0K9RK60_SPIOL; Uncharacterized protein
STRINGXP_010672196.11e-119(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59570.12e-16G2-like family protein