PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_063320_cnfq.t1
Common NameSOVF_063320
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB
Protein Properties Length: 268aa    MW: 30581.3 Da    PI: 9.1145
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_063320_cnfq.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.85.1e-082970443
                       S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
    Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43
                       WT+eE +++ +a + +  +   +W++Ia +++ g++  ++   
  Sp_063320_cnfq.t1 29 WTKEENKRFEKALAIFDEKtpdRWSRIADMIP-GKSVWDVMKQ 70
                       ********************************.*997666655 PP
2Myb_DNA-binding40.28e-13130174347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +WT++E+ +++ + +++G+g+W+ I+r +   +t+ q+ s+ qky
  Sp_063320_cnfq.t1 130 PWTEDEHRRFLLGLQKHGKGDWRNISRNFVISKTPTQVASHAQKY 174
                        8*****************************789***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.1612479IPR017884SANT domain
SuperFamilySSF466892.54E-112477IPR009057Homeodomain-like
SMARTSM007174.7E-102577IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-42675IPR009057Homeodomain-like
CDDcd001671.03E-82975No hitNo description
PfamPF002493.9E-62972IPR001005SANT/Myb domain
PROSITE profilePS5129418.069123179IPR017930Myb domain
SuperFamilySSF466891.86E-16124179IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-18126178IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.1E-10127173IPR009057Homeodomain-like
SMARTSM007179.5E-11127177IPR001005SANT/Myb domain
CDDcd001677.48E-9130175No hitNo description
PfamPF002495.2E-11130174IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MGAIYPGSMY TNSSYDNWLF GGDSKSTIWT KEENKRFEKA LAIFDEKTPD RWSRIADMIP  60
GKSVWDVMKQ YEELLVDVTD IEAGLVPIPG YLASPFTLDW VDDHAKFDPF RKRSASMSRP  120
HEQERKKGVP WTEDEHRRFL LGLQKHGKGD WRNISRNFVI SKTPTQVASH AQKYFLRQTS  180
GGKDKRRPSI HDITTANLSE NGMNTVSETD QKASFPLLQK SFNIMPKMLL DWSNSNGEAF  240
MVFDSPTHGR QNLYSSAYQG ASAYVGSH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-1529911173RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021866993.10.0transcription factor DIVARICATA-like
SwissprotQ8S9H72e-88DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0K9RI920.0A0A0K9RI92_SPIOL; Uncharacterized protein
STRINGXP_010690085.11e-161(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.12e-84MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]