PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

Sp_062390_hjsj.t1

Common Name

SOVF_062390

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

C2H2

Protein Properties

Length: 323aa MW: 36803.7 Da PI: 9.5633

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_062390_hjsj.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.1	0.00028	132	153	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ C+++Fs++ L H++ H Sp_062390_hjsj.t1 132 VCKFCNQRFSTSQALGGHQNAH 153 7******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.83E-5	130	158	No hit	No description
Gene3D	G3DSA:3.30.160.60	3.3E-4	130	157	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.533	131	158	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	133	153	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MEAPGCEVSL QANQGLLPPE IFTLETGKEV SYESQERKNF RVKSNSTKIP PLVLDVGEIT 60 LEVYTKEKAL FDLVPQEVVS KPGIPKKNQE SDMPFNFYLH LDKGEKKEIS KHPLDFPSTQ 120 SPSPPPTLNP MVCKFCNQRF STSQALGGHQ NAHKKERKIQ RAMKEAQEYA GSPFIYQFPS 180 TRNSLFHASY RGKNFQYSRY NVYSHGGWKA RPVYSNLRMG LIPSPHDQAP QGFTRFPSIQ 240 QPVYANYDHG WRKPYFLAPN PTKIRNGDTN FNPLAASNLT PFLQVRENED DLPKKQLVDS 300 TCLNFSFNNK INKSSELDLT LKL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9RIL1	0.0	A0A0K9RIL1_SPIOL; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G27880.1	2e-10	C2H2 family protein