PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_060870_ayep.t2
Common NameSOVF_060870
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 424aa    MW: 48194 Da    PI: 6.6421
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_060870_ayep.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.11.6e-13207258155
                        CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  Sp_060870_ayep.t2 207 QRMTHIAVERNRRRQMNQHLNALRSLMPPS---YVQRGDQASIIGGAIDFVKELE 258
                        79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.45E-12205262No hitNo description
PROSITE profilePS5088815.453206257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-17206274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.3E-14207270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-11207258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-11212263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MEKLQGPINP CQLITEDFEV GNWLEEFISS TTTGSLKFED PYNYYSEETS TYNGGECNLP  60
SLEDKMPFLQ MLQTVEQHHQ HQQQQQQQQH QHSVIMQQFE PANFQFLLRL QHQLVVESCV  120
TTNQDINVGN NNHNDGVITD LLHSPGVKSE TTEVHPNERV KEEDEKCDIG RSNKRTHVLK  180
TTGVTKEKRK RKRSTRPAKN KEEVETQRMT HIAVERNRRR QMNQHLNALR SLMPPSYVQR  240
GDQASIIGGA IDFVKELEQM LQSLQAQKRM KQIEENGDVS ISSTTSTSSS SNVNLSNIFM  300
ASSSSSSFHQ LRSPLHSQEE GKGNGKGNEE YSAEKKSALA DIEVVVIQNH VNLKIQCQRK  360
PGQLIQAIVA FEELRLTVLH LNITSLHSLV HYSFNLKIEE DCKLGSADEV ARAVHQIFSL  420
INLT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207218RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021845917.10.0transcription factor bHLH57-like isoform X2
TrEMBLA0A0K9RJ710.0A0A0K9RJ71_SPIOL; Uncharacterized protein
STRINGXP_010688515.11e-163(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.12e-63bHLH family protein