PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_060420_defs.t1
Common NameSOVF_060420
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family WRKY
Protein Properties Length: 165aa    MW: 18804.4 Da    PI: 5.6327
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_060420_defs.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY35.12.7e-11140164125
                        ---SS-EEEEEEE--TT-SS-EEEE CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYY 25 
                        ldDgy+WrKYGqK+vk++++pr  Y
  Sp_060420_defs.t1 140 LDDGYRWRKYGQKSVKNNKYPRYVY 164
                        59********************766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.1E-13127164IPR003657WRKY domain
SuperFamilySSF1182904.71E-10133164IPR003657WRKY domain
PROSITE profilePS5081114.183135165IPR003657WRKY domain
SMARTSM007740.0049140165IPR003657WRKY domain
PfamPF031065.3E-8141164IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MEDQQNIPQV QVQQFSPHYE LLQCIQPNNI DLASTTTVSD NIDWSSFLIN SPTANTASDD  60
DHHQFLSCFE HQSNSSDLLG GGNCSNSESN EEVRGYIDNK MENSKSRFSS SGGVSSSPRS  120
RKAREVPRFA FQTRSSEDIL DDGYRWRKYG QKSVKNNKYP RYVYM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021849039.11e-117probable WRKY transcription factor 75
TrEMBLA0A0K9RJ171e-120A0A0K9RJ17_SPIOL; Uncharacterized protein
STRINGXP_010669789.13e-37(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41570.13e-17WRKY DNA-binding protein 24