PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_059730_nizj.t1
Common NameSOVF_059730
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family AP2
Protein Properties Length: 451aa    MW: 50129.3 Da    PI: 6.6991
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_059730_nizj.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.3e-17146195155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Sp_059730_nizj.t1 146 SQYRGVTFYRRTGRWESHIWD------NgKQVYLGGFDTAHAAARAYDRAAIKFRG 195
                        78*******************......44************************997 PP
2AP2414.8e-13238288155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV+ +k  grW+A+       g    +k+++lg ++++ eAa+a+++a+++ +g
  Sp_059730_nizj.t1 238 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLYDSEVEAARAYDKAALQCNG 288
                        89********.7******...5...334336**********99**********98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.7E-10146195IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-16146205IPR016177DNA-binding domain
CDDcd000188.70E-12147205No hitNo description
PROSITE profilePS5103218.281147203IPR001471AP2/ERF domain
SMARTSM003802.4E-32147209IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-17147203IPR001471AP2/ERF domain
PfamPF008475.6E-9238288IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-16238298IPR016177DNA-binding domain
CDDcd000186.56E-25238298No hitNo description
SMARTSM003806.2E-30239302IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-15239296IPR001471AP2/ERF domain
PROSITE profilePS5103215.185239296IPR001471AP2/ERF domain
PRINTSPR003675.6E-6240251IPR001471AP2/ERF domain
PRINTSPR003675.6E-6278298IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MLDLNLTVFS HDYSNSVQNN NSFTSNNSSS LDNGDSLSSN NSPSTITYNF DILRLDTSLN  60
NDGDCCNYYP VDRGEASSTG FVTQDLFPAC DGPGRPIVWG QNPLMGVLEV RSMVMGQAQA  120
QAQAQAQKSQ QVKKKKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWDNGKQ VYLGGFDTAH  180
AAARAYDRAA IKFRGVDADI NFDVSDYEDD LKQMHSLTKE EFVHLLRRQS TGFSRGSSKY  240
RGVTLHKCGR WEARMGQLLG KKYIYLGLYD SEVEAARAYD KAALQCNGKE AVTNFDPSIY  300
GEELISEPDV GGGHYTLDLN LGIGNPSFAD NDVSYPLLHE QNCRLSDMRE KDQNWIQPAT  360
GPTAHDGHSF PSQQPSAWCG VNPIFFPVYQ EKAMEKTREI DPWSNWSWQI QHQGAHGGSM  420
PVPVFSNAAS SGFPSITTAS SAAVGRTHYS N
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021838734.10.0floral homeotic protein APETALA 2-like
SwissprotQ8H4431e-100AP23_ORYSJ; APETALA2-like protein 3
TrEMBLA0A0K9RJI30.0A0A0K9RJI3_SPIOL; Uncharacterized protein
STRINGXP_010696369.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.22e-80AP2 family protein
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]